Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0732 ATGGAGTGGGATCGAGGAGCATCCGTTGGTGGAGGAAGCTTTGCTTCAGTCCATCTGGCGATTCCCAGAAATACTTCTACTCAGTTTATCTCCCCCACAGCCGTCAAGTCCTCTCACCTTTTCAGTTCTTCTTCCCTCAAGAACGAAGAACACGTGCTCAATCACCTACGACTTTGCCCCCAGATCATCAAGTGTTTCGGCCATGACTGTACCTTTGAAAACGGTGAAGAGTACTATAATTTGTTTCTGGAATATGCCGCCGGCGGTAGTCTTGCCGATCAGCTCAAAATCCGCGGCGGTCGGTTGCCGGAATCCGATGTGCGCCGATACACGAGGTCGATCGTCGAAGGGCTGAGATATGTTCACGGTAACGGATTCGTCCACTGCGACATAAAGCTTCCGAACATTCTTTTCTTTGACAATGGCGACATCAAGATTGCAGACTTTGGACTCGCTAAGAGGTCAGGGGAAAAACAGAGCAACGAAGAATCCAAGTGCGAGTTGAGGGGAACTCCTATGTGTATGTCCCCAGAATCAGTAAACATGAACGAGTATGAATCTCCGGCGGATATATGGGCTCTCGGATGCGCAGTGGTGGAGATGGTCACCGGAAAATCCGCCTGGGATTTCAAGGACGAATCCAATATTTTCTCGCTGTTGATGCGAATTGGGGTAGGAGAAGAATTACCGGAGATTCCCAATGATCTATCAGAAGATGGGAAGGATTTTCTAAGAAAGTGTCTGGTGAAGGATCCTAGCAAGAGATGGACGGCGGAGATGCTTTTGAAGCATCCCTTTGTGGCCGACGAAGATGTTTCATTAAAGCAGGTCAATGAACCATCGACATCGCCGAGAAGTCACTTCGATTTTCCAGATTGGGCCTCAACCACAACGGCTTCAACTCTGAATTCACCGGAATCTCATGACTGGTGTGAATGGAAATTTGAATCATCTCGTTTGTCTAGTATCTGTTCCCCAGCGGATAGGCTCCGGCAGCTGGTGACGAATCAGACACCAAATTGGAAGGAATCTGACAACTGGATTTGTGTTAGATGTTAA 1059 0.4816 MEWDRGASVGGGSFASVHLAIPRNTSTQFISPTAVKSSHLFSSSSLKNEEHVLNHLRLCPQIIKCFGHDCTFENGEEYYNLFLEYAAGGSLADQLKIRGGRLPESDVRRYTRSIVEGLRYVHGNGFVHCDIKLPNILFFDNGDIKIADFGLAKRSGEKQSNEESKCELRGTPMCMSPESVNMNEYESPADIWALGCAVVEMVTGKSAWDFKDESNIFSLLMRIGVGEELPEIPNDLSEDGKDFLRKCLVKDPSKRWTAEMLLKHPFVADEDVSLKQVNEPSTSPRSHFDFPDWASTTTASTLNSPESHDWCEWKFESSRLSSICSPADRLRQLVTNQTPNWKESDNWICVRC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0732 352 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Dere09g0732 352 CDD STKc_MAPKKK 2 267 - -
Dere09g0732 352 SUPERFAMILY Protein kinase-like (PK-like) 5 305 IPR011009 -
Dere09g0732 352 FunFam Mitogen-activated protein kinase kinase kinase 17 2 297 - -
Dere09g0732 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Dere09g0732 352 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Dere09g0732 352 SMART serkin_6 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g0732 352 ProSiteProfiles Protein kinase domain profile. 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g0732 352 Pfam Protein kinase domain 6 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g0732 352 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 302 - -
Dere09g0732 352 Gene3D Transferase(Phosphotransferase) domain 1 93 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0732 Dere-ChrDere09 10145914 10146972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0732 1 351 MAP Kinase Kinase Kinase AT4G36950 52.394 2.29e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Dere09g0732 Pkinase 5.3e-55 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0732 09 10145914 10146972 Dere13g0509 13 6427339 6431359 CCT
Dere09g0732 09 10145914 10146972 Dere09g0732 09 10145914 10146972 ECH