Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0722 ATGCGCGCCAAAACAAGCAAGGTTTCCCGCGTTTTTCTTTTAAAAAAACTCATAGTCAGTGGCCACTGCTTACTGGTCCATTTGCTAGTTGCTGTCCCCACATCAGATCGTAGAGAGAGAGGGAAAATGGCGGATGAACAGCCTTCAACGGCCGCCAGACGAAGGGGAAGAGGAGCCGAGGCATCGGCGCGTTCTGAAGCATTGGAACGCCTAAAAGCTCGACTCCGTGGTGGTCGCCGATCAGACGGCGATGGATTCCAATTTAAGTTGGAAGACCCTATTTATGATACGGTCCCTGAGGATGAGTACAATGCTCTCGTCGCCAAGCGCCGCGAGGAAGCCCGAGGCTTCATCGTTGACGATGACGGTCTTGGGTACGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCACGCTGTCGTCTGAAGAATCTGATGGTGAATCAGAAAAGCCCAAAAGGAAGAAAGTGGAAAAGAAAGATCCACAACCTAAAAGGTCATCTTCTTCGCTCTCTGCTGCTGCTGCGATGATGGGGGCGCAGAGGTTGTCATCGATGTTCACTTCGTCAGTTTTTAAGAAAAGTAGGGATGATAAGGCTAAAGGATTGTCCTGTGATAGTATTGTTGATGATGTTATTGCGGAGTTTGCACCGGATGAGACTGATAGACTCAGGCGTAGAAGGGGGCCAACAAATCCCTCATATGGTTCGAATAACACCCTGCCGATTAAAAATGTTAAGAGCGAGGAACCATCAATTGGGTGTCCTGATCCAATGGGAGGTGCTTTGTTGTCGGATGTTGTTGCAAATGGGGATCTTGAATCCATCAGACTTGTTAAAAATGATGGTTGTGCCTTGGGTTCTGAGCAAAACGAAGGAGTCATAGAAGAGGCACCTACTAACGAATCAGAAGATGATAAAATTTTTAATTCCAAGAACGGCCAGGCATCCATCATGCAAACACATGATTACCCAACTAATGGAGATGTGACTGAGGAGAAAATGCTAAAGGATATAAAAGTAGAAGCTCAACAAACAATGGAGAAGGAGGTATTTCCTCTGAATGCAACAGTTAAAGAAGAGGACCCGTCACTGAGTGCGACTGCTGGTTGGCAGGCAGCGAGGAGCGGAGGCAATGTCAATGTCGCTGATCCAAAGGTGGCCAATGAAGCTTTAAATTGTGAAGAAAACTTGGAGTTCAATCTGGAGGCAGATGGGTCGCTGCCTTTCTACATTCTTGATGCCCATGAGGAGTTTTATGGAGCTAACATGGGCACCCTATATTTGTTTGGGAAGGTCAAAGCAGGTAATTCGTATCAGAGTTGCTGCGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAGTTCCAAGTCGTCCTTTACATTACACTGATGAGATGATGAAGCTTGAGAAGGATGTGGAAGAGTCCCGGATCTCTTCTACAGATTTTCATAAAAAGCTGCAAGATTTGGTATCTGGTGTTAAGAATGAGGTAGCTAAACAACTATTAGATCTGAACGTTTCAACCTTTAGCATGACACCTGTTAAGAGGAAGTATGCATTTGAACGTTCTGAAATACCTGCTGGTGAAAATTATGTGTTGAAAATCACCTATCCATTCAAGGATCCACCCCTTTCTGTAGACATGAAAGGAGAGAGTTTCTGTGCTCTTCTAGGAACTCATTGCAGTGCATTGGAGGTTTTTCTTATTAAAAGAAAGATAAAGGGACCTTCATGGCTACTGGTTTCAAATTTTTCTACCTGCTCGGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTGGACTCTCCAAAAGACATAAGGATCTCAACTTCCTCAAAATTCAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCTGTAAATTTGAAAACCACCATAAACGAAAAACAAAGCATAAATGAGATTGTCTCTGCATCCATTGTTTGCTGCTGCAGGGTTAAGATTGACACGCCCATGTTGGCTTCAGAATGGAAGAGACCTGGAATACTGACCCATTTTACTGTTATTCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAATAAGGAGGTTACAGACCGAAACACAAAAGCTGGCTCAAATGTTCTATGTGTTGAAAGCAGTGAAAGGGCTTTGCTAAACCGCCTGATGATAGAATTACACAAGTTAGATAGTGATGTTCTCGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCCAAAGTGCCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGCGGTCTGTGATGCCTAAACTTTCCAGAGTGAGCACTGTTTTTGGTTCTGGAGCTAATCCTGGGATCATGTCTTGCATTGCGGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACTTACTAAAGGAGGTTAGCTACTCCTTATCTCAACTTGCAAAATCTCAGCTGAACAAAGTTCGAAAGGAAGTTGCTCCACATGAAGTTTCAAAAATGTTCCAATCAGCAGAATCCCTTATGGAACTTATTGAGTATGGTGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAGCTGACTAATATTAGTGGCAATTTGTGGGGAAAAACTCTTCAGGGAGCAAGAGCACAGAGAGTGGAGTATCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATCGTGCCAGACAAGATTCCTTCCCATGCAAAAGAAATAAAATTGATGAAACGCAGAGTAACTCATGGTGTTGAGGATGGCAACTTTGATGAAGCAGATATTAATAATAATAACTATGACAATGATACTCCTGATGGTGATCATAGGAAAAGCAAAAAGGCTCCATCCTATGCTGGAGGACTGGTTTTGGAGCCTAAGAGGGGTTTATATGACAAATATATATTGCTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATGTTCAGATGGATCTTTTCCTCGTCTGCCATCAAGTAAAACGACTGGAGTTTTGCCAGAGTTGCTGAAGAATTTGGTTCAAAGGAGGAGAATGGTTAAGTCATGGATGAAGACTGCAACTGGTCTTAAAGTTCAGCAACTTGACATCCAGCAACAAGCACTAAAGCTTACTGCAAACAGCATGTATGGATGCCTGGGATTTGCTAATTCAAGATTTTATGCAAAGCCACTAGCTGAGCTTATAACCCTACAAGGAAGGGAGATTTTACAAAGTACCGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTGATCTACGGCGATACTGATTCAATAATGATTTACAGTGGCCTAGATGATATTGCAAAATCAAAAGCAATGGCTGGAAAGGTTATTCAAGAGGTCAACAAGAAATATAGGTGCTTGGAAATTGATCTTGACGGTTTGTACAAGAGAATGCTACTTCTTAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAATTCAAAGATGGCACACTGTATGAGGTTATTGAACGAAAGGGTCTTGATATCGTTCGTCGTGACTGGAGTCTATTATCTAAGGAAATAGGAGATTTTTGCCTAAGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTTGAATCAATTCATAGCTCTCTCAGAAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTACCATTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCTTATCCAGATGCCAAAAATCAACCACATGTGCTTGTGGCACAAAGATTGAAACAAAAGGGTTACTCCACTGGTTGCTCTGTTGGTGATACAATCCCCTATATAATCTGCTATGAACAGGGCAGTAATTCAGGCAGTGCAACAAGCATTGCTCAGCGTGCTAGATATCCTGATGAATTAAAACAAGAACAAGGGAAATGGATGATTGACATTGATTATTACTTGTCACAACAGATTCACCCTGTTGTATCACGTCTCTGTGCATCAATTCAGGGCACGAGTCCAGAAAGATTAGCTGATTGTTTAGGGATTGATGCATCAAAATTTCAACAAAAATCAAGCGAAGCCTTGAGTGCTGATCCTTCAAGCTCACTCTTGTTTGCTGCTGATGATGAAGAGAGGTATCAAGGATGTGAGCCGTTGGTCTTGTCATGTCCTAGCTGCTCTGGTACATTTAACTGCCCATCTATCTCTAAATCTATTTGTTTATCCGTAAGTGAAAAGCCAACAAGCATAGGCATGGAGAAGTCAGACTATGATTTCTGGCGTAAGCTGCGCTGTCCTAAATGCCCAGAAGAAGATGACACAGGCAGAATTTCTCCGGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATAAGTTTATATCCATGTACTACAGGGGCTTATTAATGTGTGATGATGAAACATGTAAGCATGCAACACGAAGTATCAACCTCCGGTTGGTTGGTGATTCTGAAAGAGGAACTGTATGTCCAAATTATCCTCGCTGCAATGGGCGTCTTCTAAGAAAGTACACGGAGGCAGACTTGTATAAACAGCTCTCATATTTTTGCCATGTGTTGGATACTGTTTCTTGTATAGAAAAGATGGAGGCTAAATCCAGGATACCCCTAGAGAAAGAGTTGGCCAAAATTAGGCCGATGACTGATCTGGCAGCATCAACAGTACAAAAGATTCGGGACCGTTGTGCCTATGGGTGGGTACAGCTGCAGGACTTGGTCATTACCGTATGA 4791 0.4277 MRAKTSKVSRVFLLKKLIVSGHCLLVHLLVAVPTSDRRERGKMADEQPSTAARRRGRGAEASARSEALERLKARLRGGRRSDGDGFQFKLEDPIYDTVPEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFTLSSEESDGESEKPKRKKVEKKDPQPKRSSSSLSAAAAMMGAQRLSSMFTSSVFKKSRDDKAKGLSCDSIVDDVIAEFAPDETDRLRRRRGPTNPSYGSNNTLPIKNVKSEEPSIGCPDPMGGALLSDVVANGDLESIRLVKNDGCALGSEQNEGVIEEAPTNESEDDKIFNSKNGQASIMQTHDYPTNGDVTEEKMLKDIKVEAQQTMEKEVFPLNATVKEEDPSLSATAGWQAARSGGNVNVADPKVANEALNCEENLEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAVPSRPLHYTDEMMKLEKDVEESRISSTDFHKKLQDLVSGVKNEVAKQLLDLNVSTFSMTPVKRKYAFERSEIPAGENYVLKITYPFKDPPLSVDMKGESFCALLGTHCSALEVFLIKRKIKGPSWLLVSNFSTCSASQRVSWCKFEVTVDSPKDIRISTSSKFSFEIPPVVVTAVNLKTTINEKQSINEIVSASIVCCCRVKIDTPMLASEWKRPGILTHFTVIRKLDGGIFPLGFNKEVTDRNTKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKIGRLKRSVMPKLSRVSTVFGSGANPGIMSCIAGRLLCDTYLCARDLLKEVSYSLSQLAKSQLNKVRKEVAPHEVSKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHAKEIKLMKRRVTHGVEDGNFDEADINNNNYDNDTPDGDHRKSKKAPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERCSDGSFPRLPSSKTTGVLPELLKNLVQRRRMVKSWMKTATGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKSKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTLYEVIERKGLDIVRRDWSLLSKEIGDFCLSQILSGGSCEDVVESIHSSLRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDTIPYIICYEQGSNSGSATSIAQRARYPDELKQEQGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGIDASKFQQKSSEALSADPSSSLLFAADDEERYQGCEPLVLSCPSCSGTFNCPSISKSICLSVSEKPTSIGMEKSDYDFWRKLRCPKCPEEDDTGRISPAMIANQVKRQADKFISMYYRGLLMCDDETCKHATRSINLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVLDTVSCIEKMEAKSRIPLEKELAKIRPMTDLAASTVQKIRDRCAYGWVQLQDLVITV 1596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0722 1596 CDD POLBc_alpha 960 1363 IPR045846 GO:0003887|GO:1902975
Dere09g0722 1596 Pfam DNA polymerase alpha subunit p180 N terminal 68 135 IPR024647 -
Dere09g0722 1596 FunFam DNA polymerase 1386 1582 - -
Dere09g0722 1596 FunFam DNA polymerase 452 578 - -
Dere09g0722 1596 MobiDBLite consensus disorder prediction 224 254 - -
Dere09g0722 1596 MobiDBLite consensus disorder prediction 146 167 - -
Dere09g0722 1596 FunFam DNA polymerase 1191 1377 - -
Dere09g0722 1596 Gene3D - 1191 1375 IPR042087 -
Dere09g0722 1596 Gene3D - 625 937 IPR036397 GO:0003676
Dere09g0722 1596 PRINTS DNA-directed DNA-polymerase family B signature 1060 1072 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere09g0722 1596 PRINTS DNA-directed DNA-polymerase family B signature 1113 1121 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere09g0722 1596 PRINTS DNA-directed DNA-polymerase family B signature 984 997 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere09g0722 1596 Gene3D DNA Polymerase alpha, zinc finger 1386 1582 IPR038256 -
Dere09g0722 1596 MobiDBLite consensus disorder prediction 937 965 - -
Dere09g0722 1596 CDD DNA_polB_alpha_exo 625 876 - -
Dere09g0722 1596 MobiDBLite consensus disorder prediction 120 177 - -
Dere09g0722 1596 Gene3D - 452 578 - -
Dere09g0722 1596 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 59 1594 - -
Dere09g0722 1596 Pfam DNA polymerase family B, exonuclease domain 441 819 IPR006133 -
Dere09g0722 1596 NCBIfam DNA polymerase (pol2) 92 1345 - -
Dere09g0722 1596 FunFam DNA polymerase 1025 1074 - -
Dere09g0722 1596 Pfam DNA Polymerase alpha zinc finger 1387 1592 IPR015088 GO:0003887|GO:0006260
Dere09g0722 1596 FunFam DNA polymerase 625 939 - -
Dere09g0722 1596 Pfam DNA polymerase family B 884 1347 IPR006134 GO:0000166|GO:0003677
Dere09g0722 1596 Gene3D Helix hairpin bin 1023 1074 - -
Dere09g0722 1596 ProSitePatterns DNA polymerase family B signature. 1115 1123 IPR017964 GO:0000166|GO:0003676
Dere09g0722 1596 MobiDBLite consensus disorder prediction 36 65 - -
Dere09g0722 1596 Gene3D - 412 611 - -
Dere09g0722 1596 SMART polmehr3 625 1127 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere09g0722 1596 SUPERFAMILY Ribonuclease H-like 407 913 IPR012337 -
Dere09g0722 1596 Coils Coil 1141 1161 - -
Dere09g0722 1596 Gene3D Palm domain of DNA polymerase 954 1178 IPR023211 -
Dere09g0722 1596 MobiDBLite consensus disorder prediction 233 248 - -
Dere09g0722 1596 SUPERFAMILY DNA/RNA polymerases 909 1362 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0722 Dere-ChrDere09 10044490 10057251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0722 43 1594 Core DNA Replication Machinery Family AT5G67100 61.705 0.0 1893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0722 09 10044490 10057251 Dere09g0722 09 10044490 10057251 ECH