Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0718 ATGACAGTCATCATACTACCATTTTATTATCTGGGTTCTTCGATTTTACATGCCATAATGAAACCATTTCCTGGAAGGAAATATGGCCAATTTCAGGTCGAAATTCAATGCCAATTCAACCAGGATTACCATTCCAGTCCTTCATTTCGATCTATAAGAGATAGTATCTTCTTCTTCGGAGTGTTTACGCCTAGCAGAGATACAGAAAGTGTAAGGGAAAGAAGGAGACTGAGCAGTGTCGTCGCAGAAGCCTTCAACCGTGTGCTCGCTTACTGGAATAGAACACTGGCAGATGACAATTGTATATTTACACAGCCTATCAGTTATGCATATGTTCGCGTAAGTGTGAAGTTGATGAAGGTTGTACTACAGTACGGTTTGGGTATGGCAATGAATTTAGAGAAGGTGCTGGCATTGGAGGAGTATGTATTGCCGAGGGACTTTTTCAGGAAAGCTACATTATGTGACCTTGTGTTCGTTTTTGGTATATTTTGCCTAGAGAGGATATATGCTTCAGTATTTGCTGGCATTTCCTTGGCTCATGATGTTTTCACTGTTATAGGAGGTTTGGGCCCATATGGTTCTATTGACAACATCCAAAGTGAGGCCAACTGTCATGAATCAACTGGAGCACTGGGATTTCTTTCTTCTTCAAGTTCCCATATCAGAAGCACTGATAGGATTTCTGGGCTCCCTCATCAAGAGCATGTTAATATCGTTCCAAGCAATGATAGTGGGGCAGGTGTTCTCTGTCATATAGACTTAAATGCAGAATATGTGGAAAACAATCATAACACCAATCAGAATCTGTCAGTTGGTTTGTGCCTGCATCCATTTAAACCTGATGGACCAGAGAGTGACAGTAATACTCCTAATTCAATGGCAATTGACAGTGGAAGCTCAAATGTAGTAGATGAACAAGGAATGGATGGCAGCTCAGTGGACGTGAGTCTTTTGTCCTGCAATAGATCTCCTGAACATGTTTGTAGAGAATTGTTAATGGGTGAAAGTTCAAGCACAGCGGTGCAAGCTAGGGTTCCCATATCTCAGGCTGCTACTTCCCAAGTCAATGCCAGTAACAGCTTGATCATATCAGCTCCTTATTTTCCTGCAAATATCCGTCAACAACAGTTTGATGCTGGCATTGGTCATGGAGCTATGAGCCCAGTTTCTAACATGCAACAATTTAATGAAGCTAGGCATGGTTCTGCTGATACTTTTCCAGTTTCATTTGAGGCTGGAATTGGTCATGGTATTGCAAGGCCAGTTGACATGCATCACTTAAGTCATGCTAGACAAACTGGATGCTTTCAAAGCAATATACATAGTCACACAACTGCCAATCCACAAGCCTTTGTACCGTCTAGCATGTTGTCAGTGGGGCACGTAAGTTACTCTCATGTTCACTTTCCCAACCCAATATCTTGGTATCACCAACATGACTATCCTCCTGTCTATGGCCCAGCACAAGCTTCAGTTGGCACAAATCCCTATGTTCAGCCATTTGTGCCAGCTCCTAACTTTCATGAGGCCTTGCAAGCTTCCCCTTGGGTTAACATGGGACCAAGAAGTGTTCCACCCCCATTTTCACCTGTTTATACTGTAACTGGAGGTGGAACTGTGGAAGCTTCGTATAATCCAATCAACGTTCCAAGAAATATCATGCTTGGACCTCAAACTGGAAGGAGAATTCGATCACATAATCTGGCAAACTTGAATTTTGGCTATGGAACTGCAAACTTTCCTGGAAATTTTGCTTCCCCTTCTCATTATGGTGCTTTTTCCAGTAGTCATCTATCAAATGTTCCTGCACTCGTCCCTGTGTTAAACGTTTTCGAACAACAAATGCATATGTCATTGGCAGTTGGGAACCACGTTGTGACTGCGTCTAGTGGTTTCACTGGGCAAACTAGTCATAGCCCATTAGATTCAGACTCTTCAGCAGTCTCAGTAGAATTGAACTTGACTACTGGATATGGTAATGCTAGTGGTAGATCTCAGAACCAGCAGAGGGCAGTGTCAGGATCTGCAAATCACTTTGGTGTCAATATTGGACCTCCTTATACTGCTGAAGCTAGAAACAGTCTTATAACTTTGGTTCAAAACACTTTGGAACATCTGCGCAATGGTGGAACCATGCGGGTAGAGGGCAGCCTTAGAATTTCTCTTGGACTATCATCTGTAGCTTTTACATCATTGGATTTACTGATCCTTGACTATTCACTTCTATTATTTTTGCTCGAGGATAATATTCTTGAGGAGGACGGTGAACTGAATGAGGAGAATGGGCAATCTCTACCTGGACTGAGTGAGGAAGATATTCTGATATACCTTGATCTTGAACAGTTCCACTCCTCCAACATGGAAACTCCAGAAAATGTTGAATCCTGTTGCATATGTCAGGAAAACTACGTTGATGGTGAGGACATTGGGGTGCTGGATTGCGAACACAAGTTTCATTTCGATTGCATTAAACAATGGCTGGAGATCAAGAATACCTGCCCTATCTGCGTACGGAGAGGACTTGCCGTGTAG 2535 0.4264 MTVIILPFYYLGSSILHAIMKPFPGRKYGQFQVEIQCQFNQDYHSSPSFRSIRDSIFFFGVFTPSRDTESVRERRRLSSVVAEAFNRVLAYWNRTLADDNCIFTQPISYAYVRVSVKLMKVVLQYGLGMAMNLEKVLALEEYVLPRDFFRKATLCDLVFVFGIFCLERIYASVFAGISLAHDVFTVIGGLGPYGSIDNIQSEANCHESTGALGFLSSSSSHIRSTDRISGLPHQEHVNIVPSNDSGAGVLCHIDLNAEYVENNHNTNQNLSVGLCLHPFKPDGPESDSNTPNSMAIDSGSSNVVDEQGMDGSSVDVSLLSCNRSPEHVCRELLMGESSSTAVQARVPISQAATSQVNASNSLIISAPYFPANIRQQQFDAGIGHGAMSPVSNMQQFNEARHGSADTFPVSFEAGIGHGIARPVDMHHLSHARQTGCFQSNIHSHTTANPQAFVPSSMLSVGHVSYSHVHFPNPISWYHQHDYPPVYGPAQASVGTNPYVQPFVPAPNFHEALQASPWVNMGPRSVPPPFSPVYTVTGGGTVEASYNPINVPRNIMLGPQTGRRIRSHNLANLNFGYGTANFPGNFASPSHYGAFSSSHLSNVPALVPVLNVFEQQMHMSLAVGNHVVTASSGFTGQTSHSPLDSDSSAVSVELNLTTGYGNASGRSQNQQRAVSGSANHFGVNIGPPYTAEARNSLITLVQNTLEHLRNGGTMRVEGSLRISLGLSSVAFTSLDLLILDYSLLLFLLEDNILEEDGELNEENGQSLPGLSEEDILIYLDLEQFHSSNMETPENVESCCICQENYVDGEDIGVLDCEHKFHFDCIKQWLEIKNTCPICVRRGLAV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0718 844 MobiDBLite consensus disorder prediction 285 309 - -
Dere09g0718 844 Pfam Ring finger domain 796 837 IPR001841 -
Dere09g0718 844 SUPERFAMILY RING/U-box 796 838 - -
Dere09g0718 844 MobiDBLite consensus disorder prediction 281 309 - -
Dere09g0718 844 SMART ring_2 797 837 IPR001841 -
Dere09g0718 844 ProSiteProfiles Zinc finger RING-type profile. 797 837 IPR001841 -
Dere09g0718 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 841 IPR013083 -
Dere09g0718 844 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 438 837 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0718 Dere-ChrDere09 10010764 10019512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0718 692 844 C3H Transcription Factor Family AT2G15530 35.256 6.90e-24 105