Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0708 ATGTGGGATTTGAATGACTCGCCCGATTGGAGAAAGGACGAGGAATCCGAAGGTTGTTCTTCCCTGAAGACATCCATGGACGGAGACGAGGACAAAGGGAAGAGGGTCGGATCTGTGTCGAATTCAAGCTCATTTGCGGTGGTAATCGGGGAGGGATCGGAAGAAGAGGAGGGTGAGAGGAGCAGAACATTGAAGAAGAAAAGCAGTAAGATATTCGGGTTCTGTGTGACCCAAGACGAGTCCATGGATAGCGACCCACCGGTGACCAGGCAGTTTTTCCCGGTGGAGGAGGAGGTGGCCATGTCATCGGGTGGAGGAGGGAGCACGGCCTTCCCTCGGGCCCACTGGGTGGGTGTGAGATTCTGTCAGCCAGAAGCAGGTGGTGGTGGCGGTGGTGGAAAATCAGCGGAAGTGTCGTCGCAGCCCATGAAGAAGAGTCGGCGAGGACCAAGGTCAAGGAGCTCTCAGTATAGGGGAGTCACTTTTTACAGAAGAACAGGTCGATGGGAGTCCCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCGATTAAGTTCCGGGGAGTGGAGGCCGACATCAACTTCAGCATTGAAGATTATGAAGAAGACTTGAAGCAGATGAGCAATCTAACCAAGGAGGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTTTGTTCGACACCGAGATTGAAGCTGCAAGAGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACTAATTTCGATCCCAGCATCTACGAGAATGAGCTTAATTCTGAATCCTCGGGTAACGCTGCAGATCACAATCTGGATCTAAGTTTAGGCAATTCAAGCTCAAAGCACGGCAATAGTCAAGCATTGGGGAATGATACCCCAAATACTGCAATTGATCATCACCACATGCTATCTGAATCCAGTTGGAGGAACAATGGAGGATTGAGGCCCAAGCTGACACTGCTACCAGAACAATGTAATAGAGATGGGCAGGGGGATAGTGAAGGCTTGAGGCTGTTGAACCAAAGTCAGCTTCAATCTGCAGCATCTAAAGAAATGCAAAGATCATATGGAGCCTACAGGATATCTGGAGAGCCTCAAATGCTTCAAAATTTTGCTCCTTCACATCTTCACCCACCAAGTTTTCATTTTCCAAGCAGCAGCAAGGGAGGAGGGCGAATAGGAAGTGATCTTTCACTGTCAATGAGCGATCATCACCAGCAATCGGGGCCACCTCAAGCTCAATATATAGCGACTGCTGCAGCATCATCAGGATTCCCAACGCAGATTATTAGACCTTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCCTGA 1515 0.4911 MWDLNDSPDWRKDEESEGCSSLKTSMDGDEDKGKRVGSVSNSSSFAVVIGEGSEEEEGERSRTLKKKSSKIFGFCVTQDESMDSDPPVTRQFFPVEEEVAMSSGGGGSTAFPRAHWVGVRFCQPEAGGGGGGGKSAEVSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGNAADHNLDLSLGNSSSKHGNSQALGNDTPNTAIDHHHMLSESSWRNNGGLRPKLTLLPEQCNRDGQGDSEGLRLLNQSQLQSAASKEMQRSYGAYRISGEPQMLQNFAPSHLHPPSFHFPSSSKGGGRIGSDLSLSMSDHHQQSGPPQAQYIATAAASSGFPTQIIRPSQGWLQKNGFHTLMRPS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0708 504 MobiDBLite consensus disorder prediction 126 157 - -
Dere09g0708 504 Pfam AP2 domain 247 296 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 MobiDBLite consensus disorder prediction 437 467 - -
Dere09g0708 504 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Dere09g0708 504 MobiDBLite consensus disorder prediction 312 353 - -
Dere09g0708 504 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 SUPERFAMILY DNA-binding domain 247 307 IPR016177 GO:0003677
Dere09g0708 504 CDD AP2 156 211 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 FunFam AP2-like ethylene-responsive transcription factor 155 214 - -
Dere09g0708 504 MobiDBLite consensus disorder prediction 1 63 - -
Dere09g0708 504 MobiDBLite consensus disorder prediction 1 36 - -
Dere09g0708 504 FunFam AP2-like ethylene-responsive transcription factor 247 307 - -
Dere09g0708 504 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Dere09g0708 504 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Dere09g0708 504 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 397 - -
Dere09g0708 504 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Dere09g0708 504 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0708 Dere-ChrDere09 9780205 9782785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0708 1 504 AP2-EREBP Transcription Factor Family AT4G36920 54.563 1.23e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere09g0708 AP2 3.4e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0708 09 9780205 9782785 Dere13g0497 13 6302287 6304976 CCT
Dere09g0708 09 9780205 9782785 Dere09g0708 09 9780205 9782785 ECH