Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0706 ATGGATGGTGAAGTAGGGGAAAGAGAGAGAGAGATGCCCGCCAGGAAAAGAGGGGTTGCAGAAGGAGAGAGAAGGTACAAAGGGATTAGGATGAGGAAGTGGGGTAAGTGGGTCGCCGAGATTCGAGAACCCAACAAACGTTCCAGGATTTGGCTCGGTTCTTATTCCACCCCTGTCGCCGCCGCCCGGGCTTACGACACCGCCGTTTTCTATCTCAGAGGACCATCCGCCCGCCTTAATTTCCCGGAGCTACTCGAAGGTGTCGTCGGCGGAGGAGGAGGCGACATGTCCGCGGCTTCCATCAGGAAGAAAGCGACGGAGGTTGGTGCCAGAGTTGATGCACTTCAGGCGGCTCTCCACCATCACCACCGTGCCTCGGTGGCGCCTGAGCTCATCTCACGTAACGCCGGCGCCGGCGCTGGGGAGTTTTTGGAGCGGGTTGATCTCAACAAGATACCCGAACCCGAGAATTCGGACTGCGACTGGGATGGGAATTAG 498 0.5803 MDGEVGEREREMPARKRGVAEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLEGVVGGGGGDMSAASIRKKATEVGARVDALQAALHHHHRASVAPELISRNAGAGAGEFLERVDLNKIPEPENSDCDWDGN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0706 165 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Dere09g0706 165 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Dere09g0706 165 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Dere09g0706 165 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Dere09g0706 165 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Dere09g0706 165 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Dere09g0706 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 159 - -
Dere09g0706 165 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Dere09g0706 165 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Dere09g0706 165 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0706 Dere-ChrDere09 9760450 9760947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0706 26 163 AP2-EREBP Transcription Factor Family AT2G23340 68.493 3.89e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g0706 AP2 1.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0706 09 9760450 9760947 Dere13g0495 13 6269309 6269785 CCT
Dere09g0706 09 9760450 9760947 Dere09g0706 09 9760450 9760947 ECH