LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g0701	ATGCCTTCTTCCAAAAGACACTTCCTTTCCTTCTTCTTCGTCTTCTTCTTCTTCATTCAGTGTTGCTCTTACAATGCCGCCTCGTCCACCATCAACCTGCTGCTTCCATCCGACGCCGTTTCGCTGCTATCTTTCAAATCCAAAGCCGACCCAGACAACAAGCTGCTCTACGCCCTCAACGAGCGCTACGACTACTGTGAATGGCAGGGCGTCAAATGCGCCCAAGGCAGAGTGGTTCGCTTCGTTCTTCAACACTTGGGCCTGCGTGGCGCCTTCCCTCCCAACACCTTGACTCGTCTGGACCAGCTTCGTGTCCTCAGTCTCCGCAACAACTCCCTCTCTGGTCCCATCCCTGACCTCTCCCCGCTCCTCAATCTCAAATCTCTCTTCCTCGACTATAACTCCTTCTCTGGTTCTTTCCCTCCTTCCATTCTCTTCCTCCATCGCCTCCTCACTCTTTCTCTCTCCCATAACAACCTCACCGGTTCTATCCCCGCTCAATTGCCTGTTCTCGACCGCTTGATTTCTCTCCGGCTTAATTCCAACGCCTTTAGCGGAACTCTTCCTCCGTTGAACCAGTCCTCTCTTCGAATCTTCAATGTGTCCGGGAATAATTTGAGTGGGCCGGTTCCGGTGACGCCTACACTCAGTCGATTCGACACGGCGTCTTTTTTGGGGAACCCGGGTCTGTGCGGGGAGATCATCCACAAAGCATGTGATTCTCGATCTCCATTCTTTGATTCCTCCAATGCCTCTGCGTCCATGTCCCCACTTGGGCAAAGCGCGGAATCGCAGGGAATCCTAGTTGTTCCTTCACATTCGCCCTCTGAAAAGAAGCATAAGAGCACGAGCTTGATTCTAGGTATCACCATTGGGTTCTCGGTTCTCATTGTTTCTACCCTGTTCGTTATTGCATTATTTAGAAAACGGAGCAGTTCAAGAAAACCAGAGAGCCCAAAAATACAAGCATCTTTGGAAACCAGAGATGCAAATAATGCTCCTCCTCCTGCATCTTTAGTTGTTGAAACAGCAATAGAGCAAAATAGGGAATGGAGTGACAAGGCAAAGAAGATAGAGGAAATAAAAGAAGCACATAAGAGTGGGAATTTGGTGTTCTGCAGTGGGGACGCACAGTTGTGTACAATAGAGCAATTGATGAGAGCTTCGGCGGAGTTGCTGGGTAGGGGTAACATAGGAACAACGTACAAGGCAGTGTTGGATGGTCAGCTCATAATGACGGTGAAGAGACTGGATGCAGGTAAAACAGCAATAACGAGCGGCCAAGAGTTCGAGCAGCACATGGAAATGGTGGGTGAGCTTCGGCATCCAAATTTGGTACCCGTTAGAGCTTACTTTCAGGCAAAGGGAGAGAGGCTGGTGATCTATGATTATCAACCAAATGGCAGCCTCTTCAACCTCATTCATGGTTCGAGATCAACAAGAGCTAAGCCTCTGCACTGGACGTCATGCTTAAAGATAGCTGAAGATGTAGCCCATGGACTGGCCTATATACATCAAGCCTCAAGATTAATCCATGGCAACCTAAAGTCGTCTAATGTCCTTCTTGGAGCGGACTTTGAAGCTCGTGTCACAGACTACGGCTTGGCTCTCCTTGCAGATTTTTCATCCGAACACCCTGACTCTGCAGCTTATAAAGCACCAGAGACTCGCAAGTCTAGCTGCCGAGCTACTCCCAAGTCCGATGTATACGCACTTGGGGTGCTTCTATTAGAACTTCTCACGGGTAAACACCCCTCTCAACATCCTTTCCTTGTGCCCGCGGATCTGCAGGATTGGGTCAGAACAATGAGGGATGATGATTGTGCTGAAGATAATGGGTTAGGAATGCTCACAGAGGTCGCTAGTATTTGCAGTGCAACGTCGCCTGAGCAGAGGCCCGCAATGTGGCAAGTCTTGAAGATGATACAGGAGATAAAGGAGAGTGTAACGATGGAGGATACTACATCTGCTAGGTTTTCATAG	1983	0.4917	MPSSKRHFLSFFFVFFFFIQCCSYNAASSTINLLLPSDAVSLLSFKSKADPDNKLLYALNERYDYCEWQGVKCAQGRVVRFVLQHLGLRGAFPPNTLTRLDQLRVLSLRNNSLSGPIPDLSPLLNLKSLFLDYNSFSGSFPPSILFLHRLLTLSLSHNNLTGSIPAQLPVLDRLISLRLNSNAFSGTLPPLNQSSLRIFNVSGNNLSGPVPVTPTLSRFDTASFLGNPGLCGEIIHKACDSRSPFFDSSNASASMSPLGQSAESQGILVVPSHSPSEKKHKSTSLILGITIGFSVLIVSTLFVIALFRKRSSSRKPESPKIQASLETRDANNAPPPASLVVETAIEQNREWSDKAKKIEEIKEAHKSGNLVFCSGDAQLCTIEQLMRASAELLGRGNIGTTYKAVLDGQLIMTVKRLDAGKTAITSGQEFEQHMEMVGELRHPNLVPVRAYFQAKGERLVIYDYQPNGSLFNLIHGSRSTRAKPLHWTSCLKIAEDVAHGLAYIHQASRLIHGNLKSSNVLLGADFEARVTDYGLALLADFSSEHPDSAAYKAPETRKSSCRATPKSDVYALGVLLLELLTGKHPSQHPFLVPADLQDWVRTMRDDDCAEDNGLGMLTEVASICSATSPEQRPAMWQVLKMIQEIKESVTMEDTTSARFS	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g0701	660	Gene3D	Transferase(Phosphotransferase) domain 1	466	659	-	-
	Dere09g0701	660	FunFam	Leucine-rich repeat receptor-like protein kinase	149	241	-	-
	Dere09g0701	660	SUPERFAMILY	L domain-like	38	232	-	-
	Dere09g0701	660	Gene3D	Ribonuclease Inhibitor	193	239	IPR032675	-
	Dere09g0701	660	Gene3D	Phosphorylase Kinase; domain 1	352	464	-	-
	Dere09g0701	660	MobiDBLite	consensus disorder prediction	315	335	-	-
	Dere09g0701	660	Coils	Coil	341	361	-	-
	Dere09g0701	660	FunFam	Probable inactive receptor kinase At5g67200	37	147	-	-
	Dere09g0701	660	Pfam	Protein kinase domain	390	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g0701	660	Gene3D	Ribonuclease Inhibitor	36	192	IPR032675	-
	Dere09g0701	660	ProSiteProfiles	Protein kinase domain profile.	387	645	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g0701	660	SUPERFAMILY	Protein kinase-like (PK-like)	391	647	IPR011009	-
	Dere09g0701	660	MobiDBLite	consensus disorder prediction	317	331	-	-
	Dere09g0701	660	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	16	647	IPR046959	-
	Dere09g0701	660	ProSiteProfiles	Leucine-rich repeat profile.	102	124	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g0701	Dere-ChrDere09	9721384	9724157	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g0701	27	653	Receptor kinase-like Gene Family	AT3G50230	54.769	0.0	654

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Dere09g0701		Pkinase	7.1e-32	CL0016