Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0693 ATGGCTCTGAGGGAAGAAGCCCAAGATTTGCAAGACTCTTCGTTATTCCTTGATGCGCTCCTCTGTGAGGAGGATAGCTTCGAGGAAGATCCTGCCGAGTATAATACGGAGGGGGAGAGCGATAACTATGATTCGGCCGTTAGGAATCCCTCATCTTTACCTTTGATTTTGTTGGAAAATGACCTGTTCTGGGAACACGATGAGCTCGTCTCTCTAATCTCAAAGGAGGGAGAAACTCATTTCAGTTCAAATGATCTAATTGCCGATGGGTCTCTAGAGGAAGCTCGCGAGGAGGCTGTGAGATGGATTTCTATAGTTTGTGCGCACTATGGTTTCTCTACATTGACCACTGTTCTCGCTGTGAACTACTTTGATAGATTCGTCACGAGCCTGAGGTTTCAGAAGGATAAGCCGTGGATGACACAGCTCACTGCAGTTGCCTGTTTATCTCTGGCTGCCAAAGTGGAAGAGACCCGAGTCCCACTTCTTTTGGACCTGCAAGTGGAGGAATCGAAATACGTGTTTGAAGCAAAGACGATACAGAGAATGGAGCTTCTAGTGTTATCAACTCTTAAATGGAGGATGAACCCGGTGACCCCAATCTCCTTCTTTGAACACATTGTCAGAATGCTGGGTTTAAAGAGCCGTTTGCATTGGGAGTTCCTCTTTCGGTGCGAGCGTGTTCTTCTTTCTGTCATTCTGGATTCAAGGATTATGAGTTATCTTCCTTCTACATTAGCTGTTGCCACAATGATCCACGTTATTAGTGAGATTGAACCATTAAATGCAATTAAGCACAGGAATCAGCTAATGGCTTTACTCAAAATCAGTGAGGAACAAGTGACCGACTGCTACAAACTCATACTGAAACTATTATGCTGCCGCGAAGACGTTCAAAATCTTAACCAGAAACGCAAGCGCCTGTCTGGCCCAGATGGAGTCATTGGTGTATCTTTCAGCTGTGATAGCGCCTCAAATGACTCGTGGGCCAAGGCATCATCAGTCTCATTTTCATTAGAGCCAATGTTTAAGCGACGCAGAGCTCTAGAGCAGCCGATGCAATTGCCTTCCATAAATCGTGTTTCTCTTGATGTTCTTCACAGCCCTCGTTAA 1113 0.4546 MALREEAQDLQDSSLFLDALLCEEDSFEEDPAEYNTEGESDNYDSAVRNPSSLPLILLENDLFWEHDELVSLISKEGETHFSSNDLIADGSLEEAREEAVRWISIVCAHYGFSTLTTVLAVNYFDRFVTSLRFQKDKPWMTQLTAVACLSLAAKVEETRVPLLLDLQVEESKYVFEAKTIQRMELLVLSTLKWRMNPVTPISFFEHIVRMLGLKSRLHWEFLFRCERVLLSVILDSRIMSYLPSTLAVATMIHVISEIEPLNAIKHRNQLMALLKISEEQVTDCYKLILKLLCCREDVQNLNQKRKRLSGPDGVIGVSFSCDSASNDSWAKASSVSFSLEPMFKRRRALEQPMQLPSINRVSLDVLHSPR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0693 370 Gene3D - 92 196 - -
Dere09g0693 370 Gene3D - 197 286 - -
Dere09g0693 370 SMART Cyclin_C_2 198 323 IPR004367 -
Dere09g0693 370 FunFam CYCLIN D32 197 286 - -
Dere09g0693 370 Pfam Cyclin, C-terminal domain 198 312 IPR004367 -
Dere09g0693 370 PANTHER CYCLINS 72 290 IPR039361 -
Dere09g0693 370 Pfam Cyclin, N-terminal domain 79 196 IPR006671 -
Dere09g0693 370 FunFam D3-type cyclin 89 196 - -
Dere09g0693 370 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Dere09g0693 370 CDD CYCLIN_AtCycD-like_rpt2 198 288 - -
Dere09g0693 370 SMART cyclin_7 101 189 IPR013763 -
Dere09g0693 370 SUPERFAMILY Cyclin-like 63 196 IPR036915 -
Dere09g0693 370 SUPERFAMILY Cyclin-like 180 301 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0693 Dere-ChrDere09 9675982 9677434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0693 1 360 Core Cell Cycle Gene Families AT5G67260 48.780 1.36e-108 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0474 13 6088475 6089830 Dere09g0693 09 9675982 9677434 CCT
Dere09g0693 09 9675982 9677434 Dere13g0474 13 6088475 6089830 ECH
Dere05g1660 05 26297360 26298724 Dere09g0693 09 9675982 9677434 ECH
Dere09g0693 09 9675982 9677434 Dere09g0693 09 9675982 9677434 ECH