LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g0685	ATGAATACAGCCGTTACCAGGAAGGATATGGATCGGATCAAGGGTCCATGGAGTCCCGAAGAGGACGAGGCGTTGCAGAAGCTTGTGGAGAAGCATGGACCCAGGAATTGGTCCTTGATCAGCAAGTCCATTCCCGGTCGATCCGGCAAGTCCTGCAGGCTTCGTTGGTGTAATCAGCTCTCTCCTCAAGTCGAGCACAGAGCGTTCACGCCTGAAGAGGATGAGACTATAATCAGAGCTCATGCCCGTTTCGGCAACAAATGGGCCACAATCGCTCGCCTTCTCTCTGGCCGAACCGACAACGCTATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGTGCTTCCATGATGATCGATGACGGCGGTGCTGTTGGTGGCTTCGATGGCAGTTATAGCCCGCAGCCGCTGAAGAGGTCGGTGAGTGCCGGGGCTGCTGTGCCTGTATCCACCGACCTTTATATGAACCCGCCGACACCGGGTAGCCCCTCTGGATCGGATGTAAGCGATTCCAGTGTTCCCGTTGCGTCTTCTTCTCATGTTTATAGACCTGTCCCGAGAACCGGCGGAGTTCTTCCTCCTGTGGAAACGACCTCTTCTTCGAATGACCCTCCGACGTCATTATCCCTGTGTCTTCCCGGCGTAGACTCCTCTGAAGTCTCGAATCGACCTTCAGAGCCAACACATACAGCAGCGCCCGCCAACACTATGCCTTTGTTATCCGTATTGGCGCCGGCGCCCACTCAGGCTCCAGCTCCAGCCCCACCTCCTGCTCCCGCAGCTGCTACGATGCGGGTGAAGCAGCAGGTTCATTTGGGTGGGGATGATCGAAGTGGAAGCGGCGAGGGAGGTGCGTCGGCGGCGAATCAGAATGGGTTCTTAGCTTTCAATTTCAGTGCGGAGTTGCTCGCTGTGATGCAGGATATGATAAGGAAGGAAGTGAGAAGTTATATGGCGGGGTTGGAGCAGCAGAATGGGATGTGTTTCCAGGCAGCTGATGGATTTAGAAACGCTTCGGTGAAGCGTATTGGGATTAGCAGGATCGATTCGTGA	1056	0.5502	MNTAVTRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMIDDGGAVGGFDGSYSPQPLKRSVSAGAAVPVSTDLYMNPPTPGSPSGSDVSDSSVPVASSSHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLCLPGVDSSEVSNRPSEPTHTAAPANTMPLLSVLAPAPTQAPAPAPPPAPAAATMRVKQQVHLGGDDRSGSGEGGASAANQNGFLAFNFSAELLAVMQDMIRKEVRSYMAGLEQQNGMCFQAADGFRNASVKRIGISRIDS	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g0685	351	ProSiteProfiles	Myb-like domain profile.	9	60	IPR001005	-
	Dere09g0685	351	SUPERFAMILY	Homeodomain-like	11	107	IPR009057	-
	Dere09g0685	351	CDD	SANT	68	111	IPR001005	-
	Dere09g0685	351	Gene3D	-	13	65	-	-
	Dere09g0685	351	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	115	IPR017930	-
	Dere09g0685	351	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	64	IPR017930	-
	Dere09g0685	351	MobiDBLite	consensus disorder prediction	156	179	-	-
	Dere09g0685	351	PANTHER	MYB PROTEIN-RELATED	14	217	-	-
	Dere09g0685	351	Gene3D	-	67	122	-	-
	Dere09g0685	351	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Dere09g0685	351	FunFam	Transcription factor MYB44	68	114	-	-
	Dere09g0685	351	Pfam	Myb-like DNA-binding domain	17	75	-	-
	Dere09g0685	351	MobiDBLite	consensus disorder prediction	194	236	-	-
	Dere09g0685	351	MobiDBLite	consensus disorder prediction	153	237	-	-
	Dere09g0685	351	MobiDBLite	consensus disorder prediction	247	266	-	-
	Dere09g0685	351	FunFam	MYB transcription factor	14	65	-	-
	Dere09g0685	351	CDD	SANT	16	58	IPR001005	-
	Dere09g0685	351	SMART	sant	13	62	IPR001005	-
	Dere09g0685	351	SMART	sant	65	113	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g0685	Dere-ChrDere09	9634167	9635222	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g0685	6	350	MYB Transcription Factor Family	AT4G37260	49.036	1.74e-102	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere09g0685		Myb_DNA-bind_6	5.9e-18	CL0123