Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0649 ATGCCTCTTCAGGATCACGATGGCGAACAACCACTGTTGATCGATTCTTACCATGATCCAAAATCAACCGAAACCGCTTACGATTCTTCTGAGAAAGTCGTCGTCGTCGGAGTCGACGACACCGACACTGACAACGACGACTGTGCTCGTGCCCCGCCCTTCTCATGGAAGAAGCTCTGGCTCTTCACAGGCCCTGGGTTTCTCATGAGCATTGCCTTTCTCGATCCTGGAAACCTGGAGGGAGATCTTCAGGCTGGCGCCATTGCTGGCTACTCCCTCTTATGGCTTCTCATGTGGGCTACTGCTATGGGGCTTCTGGTTCAGCTTTTGGCGGCGCGCCTCGGAGTGGTGACTGGGAGGAATCTGGCTGAACTCTGCAGAGAGGAGTATCCAACATGGGCGAGGATGATTCTGTGGGTTATGGCGGAGTTGGCTCTGATTGGGGCTGACATTCAAGAAGTTATTGGGAGCGCGATTGCTATCAGAATCCTAAGTAATGGGATTCTGCCCCTTTGGGCAGGGGTCATCATCACAGCTTGTGATTGTTTTATTTTCCTATTCCTTGAGAACTATGGCGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTAATTGGTGTAATGGCTCTCTCATTTGCGTGGATGTTTGGTGAAACAAAGCCCAGCGGCAAAGATCTTCTTCTTGGTATTTTGGTTCCAAAACTTAGCTCCAGAACAATACAGCAGGCTGTTGGAGTTGTGGGTTGCATCATTATGCCTCACAATGTATTCTTGCACTCTGCACTTGTTCAATCACGACAGGTTGACCAGAACAAGAAAGGCCGAGTTCAGGAAGCTCTTAGTTATTATTCCATAGAGTCAACTGCTGCCCTTATCATCTCCTTTATCATTAATGTATTTGTCACGACTGTGTTTGCCAAGGGTTTCTATGGTACTGACGTGGCAAATAATGTTGGTCTTGTGAATGCTGGGCAGTATCTTGAGGAGAAGTACGGGGGTGGGCTTCTTCCAATCTTATATATATGGGGTATTGGATTATTAGCAGCCGGCCAAAGTAGCACTATTACTGGGACTTATGCAGGGCAATTTATCATGGGGGGTTTTCTTAATTTAAGGTTGAAAAAATGGATGAGGTCATTAATTACACGAAGTTGTGCTATCATCCCAACTGTTGCAGTTGCTCTTGTCTCTGAAACATCAGAGGACTCGTTAGATGTTCTAAATGAATGGCTTAATGTTCTCCAGTCAATTCAAATCCCCTTTGCACTTATTCCCTTGCTTTGTCTGGTGTCAAAGGAGCAGATAATGGGCATTTTCAGAATTGGCTCTGTCCTCAAGACTATTGCATGGCTTGTGGCTGCACTGGTGATAGTGATCAATGGCTATCTTATGCTAGAATTCTTCAAATCTGAAGTAAATGGAGTAGTGTTTGGTGCTGCCATGTGTGCATTTGCGGCTGCATATGTTGCATTTATAATTTACCTTGTTTCACGGGCCATTACCTTTTCACCTGGGCCAAGTTCAACACTATCAAAGACAATTGCTAACTCACAGAATTGA 1557 0.456 MPLQDHDGEQPLLIDSYHDPKSTETAYDSSEKVVVVGVDDTDTDNDDCARAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLAARLGVVTGRNLAELCREEYPTWARMILWVMAELALIGADIQEVIGSAIAIRILSNGILPLWAGVIITACDCFIFLFLENYGVRKLEAFFAVLIGVMALSFAWMFGETKPSGKDLLLGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDQNKKGRVQEALSYYSIESTAALIISFIINVFVTTVFAKGFYGTDVANNVGLVNAGQYLEEKYGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRSLITRSCAIIPTVAVALVSETSEDSLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQIMGIFRIGSVLKTIAWLVAALVIVINGYLMLEFFKSEVNGVVFGAAMCAFAAAYVAFIIYLVSRAITFSPGPSSTLSKTIANSQN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0649 518 Hamap Divalent metal cation transporter MntH [mntH]. 43 467 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 PRINTS Natural resistance-associated macrophage protein signature 242 265 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 PRINTS Natural resistance-associated macrophage protein signature 138 164 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 PRINTS Natural resistance-associated macrophage protein signature 193 214 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 PRINTS Natural resistance-associated macrophage protein signature 411 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 PRINTS Natural resistance-associated macrophage protein signature 168 187 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 PRINTS Natural resistance-associated macrophage protein signature 349 368 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 PRINTS Natural resistance-associated macrophage protein signature 377 394 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 Pfam Natural resistance-associated macrophage protein 80 440 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 NCBIfam Nramp family divalent metal transporter 64 433 - -
Dere09g0649 518 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 51 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere09g0649 518 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 57 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0649 Dere-ChrDere09 9310628 9313688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0649 7 505 Inorganic Solute Cotransporters AT2G23150 77.645 0.0 784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0649 09 9310628 9313688 Dere13g0458 13 5846824 5849450 CCT
Dere09g0649 09 9310628 9313688 Dere09g0649 09 9310628 9313688 ECH