Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0622 ATGAGTTGCAACGGCTGCCGAGTTCTTCGAAAGGGTTGCAGCGAATCCTGTATTTTGCGACCTTGCTTGCAGTGGATCGACACGCCCGAAGCCCAAGGCCATGCCACAGTCTTCGTGGCCAAGTTCTTTGGCCGCGCTGGCCTCATGTCCTTCATTTCCAACGTTCCTGAAAACCAGAGACCTGCTCTGTTTCAGTCTTTGTTGTTCGAAGCGTGTGGGCGAACGGTGAACCCGGTAAACGGAGCGGTGGGGCTTCTATGGACGGGAAACTGGCACGTGTGTCAGGCCGCCGTCGAGACGGTGCTCCGAGGTGGCTCGTTGAGGCCCATTCCTGAGCTTCTCTGCGTGGATGCTCCTACTCTGGCTACCGACGAGGCATCCGAGGCGGAAGTCACATGCACCGACATGTGGAGCATCCGAGATCCGAACCCGAGTTCTCGGTTCACGAATTCGCGATCTAACAAGTTCTCTGCCTGCAAACGCAAGCGATCAGATGAATCCAGCAAGCCTCAAACGACTGATCTTAACCTCCGGTTGACGCCGAGTTTCCTGCAGAAAGTGTCAGGCTACAGCTGCAGACCGGAAATCGGCCGGCCGGGTACGCCGTCGATGAACTCGGAAGAATCAGTGACGACGACGGCGTGCTTGGAAAGTGGACTGGGAGATCACTACGCTCACGGCGTAGAGCCGAAACTTCTCAACTTTTTCATGTGA 714 0.5616 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGSLRPIPELLCVDAPTLATDEASEAEVTCTDMWSIRDPNPSSRFTNSRSNKFSACKRKRSDESSKPQTTDLNLRLTPSFLQKVSGYSCRPEIGRPGTPSMNSEESVTTTACLESGLGDHYAHGVEPKLLNFFM 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0622 237 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Dere09g0622 237 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Dere09g0622 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 217 - -
Dere09g0622 237 MobiDBLite consensus disorder prediction 142 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0622 Dere-ChrDere09 9055810 9056605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0622 1 236 AS2 family AT3G49940 57.198 5.48e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere09g0622 LOB 3.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0430 13 5527197 5528013 Dere09g0622 09 9055810 9056605 CCT
Dere09g0622 09 9055810 9056605 Dere13g0430 13 5527197 5528013 ECH
Dere09g0622 09 9055810 9056605 Dere09g0622 09 9055810 9056605 ECH