Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0616 ATGGATGGTGATGGTGATGGTGATGGCGATGGCGATGGTGGGTTGCGGAGTATGTATTCCCATCTCACATGGAATGTGCATAGACACGATGGGAGAGAGACTGTGAGAGATTTAAAAAAGAGACTTACAGGCAATATGGGACAAGAGTTTGGGACGGTGGTGGTGAGAGAATTCGACCCAAATAAGGACAGAGGGAGAGTGGAAGCCGTGGAAAGGATATGTGAGGTTGGACCCAGTGGGAAGCTCTCCCTCTTCACCGACCTCATGGGTGACCCAATTTGCAGGGTCCGCCACTCACCTGCCTTCCTCATGCTGGTGGCTGAGATGGGAGAAGAGATTGTAGGAATGATAAGGGGCTGCATCAAAACCGTTACGTGCGGAAAGAAGCTATCCAGAAATGGGAAGAACCCCCACATGACTATCAACAACGCTGACACCTTCCAAGCCACTCCCAAACACGTCCCTGTATACACCAAAGTATCCTACATTTTAGGCCTCCGCGTATCGCCATCTCACCGGAGAATGGGAATAGGGTTGAAGCTGGTGCACAGAATGGAGGAGTGGTTCAGAGACAATGGAGCTGAATACTCGTACATAGCAACGGAAAACGACAATTTAGCATCCGTCAAGCTCTTCACCGACAAATGCGGGTACTCCAAGTTCCGTACCCCTTCTATCCTTGTCAACCCCGTTTTCGCTCATCGGGAGAAAGTATCACGCAAGGTGACCATCATTCAACTCAACCCCTCCGACGCCGAATCCCTCTATCGCCGCCGCTTCGCCACCACCGAGTTCTTCCCTCGCGACATTGACTCCGTCCTCAACAACAAACTCAGTCTTGGCACCTTCCTCGCCGTCCCAAGTGGATCCTACCGCGCCGAGACATGGCCCGGGTCGGATCGCTTCCTGTCGGACCCACCAGAGTCCTGGGCAGTGCTCAGCGTCTGGAACTGCAAGGACGTGTTCACGCTCGAAGTGCGGGGCGTGTCGCGCGTGAAGCGCACTCTCGCGAAAACGACCCGGATAGTGGACCGGGCCTTTCCGTGGCTGAGGCTACCGTCGATTCCGAATTTCTTCAAGCCGTTCGGGTTCCACTTCATGTACGGGCTGGGAGGTGAAGGCCCAGAAGCGGCGAAGATGGTGAAGGCCTTGTGTGCCTTCGCGAATAACCTGGCCAAGCAACGTGGGTGCGGGGTGGTGGCTACGGAGGTCTCCAGCCGCGATCCCCTCCGGTTCGGGATACCACACTGGAAGAGGCTATCTTGCGCCGAGGACTTATGGTGCATCAAGCGGCTCGGGGAAGACTACAGTGACGGCTCCGTCGGTGACTGGACCAAATCTCCGCCTGGATGGTCCATTTTTGTTGACCCCAGAGAGTTCTGA 1383 0.5517 MDGDGDGDGDGDGGLRSMYSHLTWNVHRHDGRETVRDLKKRLTGNMGQEFGTVVVREFDPNKDRGRVEAVERICEVGPSGKLSLFTDLMGDPICRVRHSPAFLMLVAEMGEEIVGMIRGCIKTVTCGKKLSRNGKNPHMTINNADTFQATPKHVPVYTKVSYILGLRVSPSHRRMGIGLKLVHRMEEWFRDNGAEYSYIATENDNLASVKLFTDKCGYSKFRTPSILVNPVFAHREKVSRKVTIIQLNPSDAESLYRRRFATTEFFPRDIDSVLNNKLSLGTFLAVPSGSYRAETWPGSDRFLSDPPESWAVLSVWNCKDVFTLEVRGVSRVKRTLAKTTRIVDRAFPWLRLPSIPNFFKPFGFHFMYGLGGEGPEAAKMVKALCAFANNLAKQRGCGVVATEVSSRDPLRFGIPHWKRLSCAEDLWCIKRLGEDYSDGSVGDWTKSPPGWSIFVDPREF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0616 460 CDD NAT_SF 104 196 - -
Dere09g0616 460 FunFam Probable N-acetyltransferase HLS1-like 62 225 - -
Dere09g0616 460 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 94 220 IPR016181 -
Dere09g0616 460 Gene3D - 91 224 - -
Dere09g0616 460 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 49 460 - -
Dere09g0616 460 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 53 245 IPR000182 GO:0016747
Dere09g0616 460 Pfam Acetyltransferase (GNAT) family 98 218 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0616 Dere-ChrDere09 9002322 9004949 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Dere09g0616 Acetyltransf_1 5e-18 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0616 09 9002322 9004949 Dere13g0421 13 5429051 5430571 CCT
Dere09g0616 09 9002322 9004949 Dere09g0616 09 9002322 9004949 ECH