Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0607 ATGGAGAGCTTTTTAGATGAACATTTTACGAGTGTGAAGCCGAAGAACTCGTCTGACGAAGCTCTTGAGAAATGGAGGAAACTGTGCGGCGTAGTGAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAATCTCTCCAAGCGAGGGGAAGCAGCTGCTATGCGTCGTACCAATCAGGAAAAGCTAAGGGTTGCTGTTCTTGTTTCCAAGGCAGCATTTCAATTTATCCAAGGTGCACAACTAAGTGATTATGATGTACCTGAGGACGTTAAAGCTGCAGGTTTTCAGATCTGTCCTGAAGAATTGGGGTCTATTGTTGAAGGCCATGATTTAAAGAAGCTGAAATATCATGGCGAGGCTAGTGGTATTGCAGATAAACTTTCTACATCAACCACCGATGGGCTTAGCAGTGATACTGATTTGCTAAATAAGAGGCAGCAGATTTATGGAATCAACAAATTTGCTGAGAGTGAGGCTCGGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGAGTGTGTGCTCTTATGTCTCTCATAGTTGGCATAGCAATGGAAGGATGGCTCCATGGAGCCCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCACTACAATTCAAGGATTTGGACAAAGAGAAGAAGAAGATTTCCATTCAGGTCACGAGAAATGGTTATAGGCAGAAAAAGTCAATATATGATTTGCTTCCTGGTGACGTGGTGCATCTTGCTATAGGTGACCAAGTCCCAGCCGATGGCCTATTTCTTTCCGGATTCTCTGTGTTGATTGATGAGTCAAGTTTAACTGGCGAAAGTGAACCAGTGATGGTGAGTTCTGAAAATCCGTTTCTTCTCTCTGGAACTAAGGTCCAAGATGGCTCTTGCAAGATGTTGGTTACCACAGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTCAGTGAAGGAGGGGATGATGAAACCCCATTGCAGGTGAAGTTAAATGGAGTGGCAACCATTATTGGGAAGATAGGCTTATTCTTTGCTGTAGTTACTTTTGCAGTTTTAGTGCAAGGACTTGTGAGCCATAAATTCCAACAAGGAAGCTTCTTGACCTGGTCTGGAGATGATGCCTTGCAACTGTTGGAATTCTTTGCTGTTGCAGTTACAATTGTGGTTGTTGCTGTTCCAGAGGGGCTGCCATTAGCTGTCACATTGAGCCTTGCTTTTGCTATGAAGAAGATGATGAATGACAAAGCGCTTGTCCGACACTTGGCAGCTTGTGAGACCATGGGTTCAGCCACAACAATATGCAGTGACAAGACAGGAACATTAACAACCAATCGCATGACGGTTGTGAAAACATGCATTTGTATGAATAGCAAAGAAGTAAGCAATAGTGCTTCTTCTACCTTGTGCTCTGATCTCCCTGATTCAGCAGTGAAACTGCTGCTACAGTCAATATTTAATAATACTGGAGGAGAAGTTGTGATCAATGAAAATGGAAAACGTGAAGTTTTGGGGACACCAACAGAGACTGCAATATTGGAGCTTGGGTTATCACTAGGTGGGGATTTTCAAGCAGAGAGAAATGCATGTAAACTTGTCAAGGTTGAGCCATTTAACTCTGTGAAGAAAAGGATGGGTGTGGTTGTGGAGCTTCCTGAAGGAGGAGGCTTAAGAGCCCACACTAAAGGAGCTTCTGAAATAATTCTGGCTGCCTGTGACAAGGTGATCAATTCCAAAGGCGAGGTTGTTCCACTTGATGAAGAATCAAATAATCATCTTAAGGTTACAATTAACCAATTTGCAAGTGAGGCACTTAGAACTCTGTGCCTTGCCTATATGGACTTAGAAAAGGGATTCTCAGCTGAAGACCCCATTCCAGTTTCTGGGTTTATTTGTATTGGAGTTGTTGGTATTAAGGATCCTGTTCGTCCTGGTGTTAAGGAATCAGTGGCAATTTGTCGTTCGGCTGGTATAACTGTAAGGATGGTTACTGGTGACAATATTAATACTGCAAAGGCTATAGCAAGAGAGTGTGGAATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGAATTTAGAGAGAAAAGTCAAGAGGAATTGTTCAAATTGATTCCAAAAATTCAGGTTATGGCTCGATCTTCACCTTTGGACAAACATACATTGGTGAAACACCTGCGTACCACTTTAGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCCCTCCATGAAGCAGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATCATTCTAGATGATAATTTCTCCACAATCGTGACAGTGGCAAAATGGGGACGTTCAGTTTATATAAACATTCAGAAATTTGTACAGTTCCAGCTGACTGTTAATGTGGTTGCATTACTAGTGAACTTCACTTCAGCATGCTTGACAGGGAGTGCACCCCTCACAGCAGTGCAACTACTGTGGGTGAACATGATAATGGATACACTGGGAGCACTGGCACTTGCAACTGAACCTCCAAATGATGAATTGATGAAGCGTTCACCGGTTGGAAGGAAGGGCAATTTCATTAGCAACATTATGTGGAGGAACATCTTAGGCCAATCATTGTATCAGATTATGGTGATATGGTTTCTTCAGTCCAGAGGAAAATGTTACTTTAATCTCAGTGGCCCTGATGCTGATCTGATCTTAAACACTCTTATTTTCAACGCATTTGTCTTCTGTCAGGTTTTCAATGAAATAAGCTCACGTGAGATGGAGAAGATAGATGTGTTGAAAGGAATATTGAATAATTATGTTTTCGTAGGCGTCATCGGTTGCACTGTTATCTTTCAGATCATAATAGTCGAGTACTTGGGAACCTTCGCAAACACCACACCTCTCACTCTGCAGCAATGGTTATCAAGCATACTTTTTGGGTTTTTGGGCATGCCAATTGCTGCTTTCATGAAGATGATCTCCGTCTGA 3051 0.4274 MESFLDEHFTSVKPKNSSDEALEKWRKLCGVVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGAQLSDYDVPEDVKAAGFQICPEELGSIVEGHDLKKLKYHGEASGIADKLSTSTTDGLSSDTDLLNKRQQIYGINKFAESEARSFWVFVWEALQDMTLMILGVCALMSLIVGIAMEGWLHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKKSIYDLLPGDVVHLAIGDQVPADGLFLSGFSVLIDESSLTGESEPVMVSSENPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLVSHKFQQGSFLTWSGDDALQLLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVSNSASSTLCSDLPDSAVKLLLQSIFNNTGGEVVINENGKREVLGTPTETAILELGLSLGGDFQAERNACKLVKVEPFNSVKKRMGVVVELPEGGGLRAHTKGASEIILAACDKVINSKGEVVPLDEESNNHLKVTINQFASEALRTLCLAYMDLEKGFSAEDPIPVSGFICIGVVGIKDPVRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSQEELFKLIPKIQVMARSSPLDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRKGNFISNIMWRNILGQSLYQIMVIWFLQSRGKCYFNLSGPDADLILNTLIFNAFVFCQVFNEISSREMEKIDVLKGILNNYVFVGVIGCTVIFQIIIVEYLGTFANTTPLTLQQWLSSILFGFLGMPIAAFMKMISV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0607 1016 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 664 IPR023299 GO:0000166
Dere09g0607 1016 FunFam Calcium-transporting ATPase 216 336 - -
Dere09g0607 1016 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Dere09g0607 1016 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1014 IPR023298 -
Dere09g0607 1016 NCBIfam HAD-IC family P-type ATPase 547 700 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere09g0607 1016 NCBIfam HAD-IC family P-type ATPase 205 481 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere09g0607 1016 NCBIfam HAD-IC family P-type ATPase 725 841 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere09g0607 1016 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Dere09g0607 1016 Pfam Cation transporting ATPase, C-terminus 840 1014 IPR006068 -
Dere09g0607 1016 Pfam E1-E2 ATPase 237 431 - -
Dere09g0607 1016 FunFam Calcium-transporting ATPase 647 800 - -
Dere09g0607 1016 SFLD Haloacid Dehalogenase 435 807 - -
Dere09g0607 1016 PRINTS P-type cation-transporting ATPase superfamily signature 674 684 - -
Dere09g0607 1016 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Dere09g0607 1016 PRINTS P-type cation-transporting ATPase superfamily signature 652 663 - -
Dere09g0607 1016 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Dere09g0607 1016 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Dere09g0607 1016 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Dere09g0607 1016 Gene3D - 17 77 - -
Dere09g0607 1016 SFLD p-type atpase 435 807 IPR044492 -
Dere09g0607 1016 Gene3D - 140 336 - -
Dere09g0607 1016 Gene3D - 168 1014 - -
Dere09g0607 1016 Gene3D - 450 800 IPR023214 -
Dere09g0607 1016 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere09g0607 1016 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere09g0607 1016 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere09g0607 1016 SUPERFAMILY HAD-like 451 860 IPR036412 -
Dere09g0607 1016 Gene3D - 463 659 IPR023299 GO:0000166
Dere09g0607 1016 PANTHER CATION TRANSPORTING ATPASE 66 1015 - -
Dere09g0607 1016 FunFam Calcium-transporting ATPase 463 659 - -
Dere09g0607 1016 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Dere09g0607 1016 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Dere09g0607 1016 Pfam Cation transport ATPase (P-type) 514 593 - -
Dere09g0607 1016 NCBIfam calcium-translocating P-type ATPase, PMCA-type 112 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Dere09g0607 1016 FunFam Calcium-transporting ATPase 772 1016 - -
Dere09g0607 1016 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Dere09g0607 1016 Pfam haloacid dehalogenase-like hydrolase 652 769 - -
Dere09g0607 1016 CDD P-type_ATPase_Ca_PMCA-like 142 888 - -
Dere09g0607 1016 FunFam Calcium-transporting ATPase 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0607 Dere-ChrDere09 8928433 8933516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0607 1 1016 Primary Pumps ATPases AT4G37640 82.480 0.0 1718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0607 09 8928433 8933516 Dere09g0607 09 8928433 8933516 ECH