Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0598 ATGGGAGCTCCAAAGCAAAAATGGACTGCAGAAGAAGAAGCAGCACTGAAAGCTGGAGTAATCAAACATGGGGCTGGAAAATGGCGCACTATACTTACAGACCCAGAGTTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTGAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGATCCAGGCAGAAGGCAAAACTTGCACTTAAAAGGAACCTACCAAACTCCAAACATGATAACAACCAAATCGCCTTGAGTGTTGTAGTTCAACATGATGAAGAAGTTCTTGATACTAAGCCTCTAGCAGTTTCTGGTGGAATGTTGCAGTCAGCTAAGTCAAAAGAACAAATATCTAGGTTGGATAATCTCATATTAGAGGCTATTATCAATTTAAAGGAGCCAAAGGGTTCAGACAGGGCAGGGATTGCTGCTTATATAGAGGAGCAATACTGTTCTCCACCGAACCTAAGAAAGTTATTATCAACAAAACTGAAGTATATGGTGGCAAGTGGCAGATTGACCAAGGTAAAACATAAGTACAGAATTACACCAAGTTCCACAGTCTCTGAGAAAAGAAGATGCTCTAACTTGTTACTCTTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCAGAGAAGACCAATGTCAATATTCTTTCAAAGTCCCAGATTGATGCAGAGTTATCAAAAATGAAGGGTGTGACAGCCCAAGAAGCTGCTGCAGCTGCTGCGAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGAGGCAGAGGCAGCAGCAAGGGAGGCAGAAGCTGCAGAAGCTGAAGCCGAGGCAGCGCAAGTGTTTGCAAAAGCTGCAATGAAGGCACTAAAATGCAGGACACTGCAAATATGGTAG 888 0.4347 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPNSKHDNNQIALSVVVQHDEEVLDTKPLAVSGGMLQSAKSKEQISRLDNLILEAIINLKEPKGSDRAGIAAYIEEQYCSPPNLRKLLSTKLKYMVASGRLTKVKHKYRITPSSTVSEKRRCSNLLLLEGRPKDSPKAEKTNVNILSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKCRTLQIW 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0598 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Dere09g0598 295 Coils Coil 242 279 - -
Dere09g0598 295 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
Dere09g0598 295 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Dere09g0598 295 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere09g0598 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Dere09g0598 295 CDD SANT_TRF 6 57 - -
Dere09g0598 295 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Dere09g0598 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Dere09g0598 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere09g0598 295 Gene3D - 2 59 - -
Dere09g0598 295 Gene3D - 114 196 IPR036388 -
Dere09g0598 295 FunFam Telomere repeat-binding factor 1 2 58 - -
Dere09g0598 295 SMART sant 4 59 IPR001005 -
Dere09g0598 295 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0598 Dere-ChrDere09 8860302 8863237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0598 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 58.703 3.35e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere09g0598 Linker_histone 1.2e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0598 09 8860302 8863237 Dere13g0408 13 5272807 5277012 CCT