Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0588 ATGCCGATGTATCAGCCTTCTAAGAGAGATGTGGTTGCTGGGTTCGACGGTGGTGGTGACGGGCAAATTCTAGATCTGGATACCGCCGTCAAAGACGGGGTTTTAGGTGGTGTTGACGGTGGGATTGTGGGAGCTGGAGCTGGTGAGAAATTGGATCTGGGGAAGATGATTCAAGAGCTCGACTTGTCCGAAGTGCCCTCAGTATTTATCTGCCCAATCTCTCTTGAACCAATGCAAGACCCAGTCACACTCTGCACCGGCCAAACCTACGAGAGGTCCAACATTCTCAGATGGTTCAATTTGGGGCACCTAACCTGCCCCACTACGATGCAAGAACTCTGGGACGACTCCATTACTCCAAATACGACCCTTTACCGTCTAATCTACACTTGGTTTTCTCAGAAGTATCTGCTGATGAAGAAGAGATCGGAAGATGTGCAGGGGAGGGCATCAGAACTCGTCGAGACGCTGAAGAAAGTGAAGGGTCAAGCTCGAGTTCAGGCCCTCAAGGAGCTCCATGAGGTGGTGGCTGCTCATTCCACTGCTCGTAAGACAGTCATTGACGAAGGTGGCGTCTCTGTAATGTCTTCCTTACTCGGTCCTTTTACTTCACATGCTGTTGGCTGCGAGGTCATTGGTATTCTTGTATGTTTGACCCTTGATTCTGAATCAAAAAAGAATTTAATGCAACCTGCAAAGCTTTCTTTAATGGTGGACATTTTGAACGAGGGTTCAATTGAGACCAAAATCAATTGCACCCGATTGATTGAATCATTGATTGAGGAGAAGGATTTCCGGTCTGAGATAATCTCTAGCCATAGCCTTTTGGTTGGGTTGATGCGGCTAGTCAAGGATAAGAGACACTCACACGGAGTTTTTCCTGGACTTAGCCTCCTCAGAACAATATGCTTGCATAAAGAAGTTAGGAATTTGCTAGTGAGCATTGGGGCTGTTTCTCAGTTGATTGAATTGTTGTCTGGTCTGGAGCCCGAGTGTTCTGAATTGGCGCTTTCCATTTTAGATGCATTGGCATCGATACCAGAAGGCAGAGTAGCTTTGAAGAACTGCTCTAACACTATACCATGTATGGTCAATCATTTAATGAGAATCTCAGAGAACTGCACGCAATATGCATTGTCGATTCTATGGTCTGTGTGCAAGCTTGCGCCTGAGGAGTGCTCATCCGTTGCTCTAGATGCAGGACTTGCTGCAAAACTCCTCCTTGTGATCCAAAGTGGATGCAATCCTATATTGAAACAACAGTCTGCTGAGCTTTTGAAACTGTGTAGTTTAAATTATTCGGACACCATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1350 0.4607 MPMYQPSKRDVVAGFDGGGDGQILDLDTAVKDGVLGGVDGGIVGAGAGEKLDLGKMIQELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILRWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHEVVAAHSTARKTVIDEGGVSVMSSLLGPFTSHAVGCEVIGILVCLTLDSESKKNLMQPAKLSLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSHGVFPGLSLLRTICLHKEVRNLLVSIGAVSQLIELLSGLEPECSELALSILDALASIPEGRVALKNCSNTIPCMVNHLMRISENCTQYALSILWSVCKLAPEECSSVALDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0588 449 Gene3D - 138 443 IPR011989 -
Dere09g0588 449 SUPERFAMILY ARM repeat 235 435 IPR016024 -
Dere09g0588 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Dere09g0588 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Dere09g0588 449 SUPERFAMILY RING/U-box 60 135 - -
Dere09g0588 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Dere09g0588 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Dere09g0588 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Dere09g0588 449 PANTHER WDSAM1 PROTEIN 61 435 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0588 Dere-ChrDere09 8789493 8790842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0588 1 449 U-box Gene Family AT3G49810 74.610 0.0 670