Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0572 ATGGAAGAGGGAGTCAGAAGTTGGGCAAGAGTCAAACGCGCTTTCATTCCCTTCATTAATGGGTTCTTCCAGATTGGCATGGATGTCATCATGTGGTTGGGCCCCTTGCCCCACCCATCCCGCACAGCTCACACCGGCGGCCATATAACTCGTCATTTCAAGCTGTGTGCACAATTGGTTCTCATGGCCGAAACAAGTGAAAATACCTCGAAAGAAACTGTACGCGAATACGAAGTTATGGAGGACCAAACTTTCGAAGAGCTAGGATTGGACGCTCGTCTAATTCGTGCCTTACTTAAAAAGGGAATTGAGAAACCCACTCCAATTCAGCGGGTTGGAATTCCACTCATATTAGAAGGTAAGGATGTTGTTGCTCGAGCAAAGACGGGTTCTGGCAAGACATTTGCATACCTTCTTCCGTTGCTTCAAAAATTGTTTACTAATAATGTTCAAAGAAAGAAGCTAGCGCCCAATGCGTTCATTCTTGTGCCAACTCGAGAACTGTGTCAACAGGTATATGCAGAAGTCGTATCTCTCATAGAATTATGCAGGGTTCAATTGAAAGTTGTGCAATTGACTGGCAATATGCGAGCTTCTGATCTGCGGACAGCTCTAACTGGGCCTCCTGATGTTTTGATTTCCACACCTGCTTGCATAGCTAAGTGCTTGTCCACTGGCATACTTCAAGCGGCATCCATTAATAGTTCACTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTGTCATATGGCTATGAAAATGACATAAAAGCTTTTACAGCTCACATACCCAGAAGTTGCCAATGTCTTCTTATGTCTGCAACATCAAATGCTGATGTTGACAAACTAAAGAAGTTGATTCTGCACAATCCCTTCATTTTGACTTTGCCTGAAGTAGGAAATCAGAAGGATGAGGTCATCCCTAAAAATGTCCAACAGTTTTGGATCTCTTGCCCTGCCCGTGATAAGTTGCTTTACATCCTTTCTCTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACCAATAGCATAGACATGAGTTTCAGATTAAAACTATTCCTGGAAAAGTTTGGTATCAAGTCTGCTGTCTTAAATGCTGAGTTGCCACAGAATTCTCGTCTTCATATTCTAGAGGAATTTAATGCTGGCCTCTTTGATTATCTAATTGCAACTGATGACAGCCACGCAAAGGAGAAGGATGAAGCAATTAAGGAAAGTAATGGTGAATTGCGGAGGTCTAAAAAACATGTCAAGCAAAAATTAGATTCTGAATTTGGAGTAGTGAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGAAGGATATGTTCATCGAATAGGACGTACTGGAAGAGCTTACAATTCTGGTTGTTCTGTCTCTCTGGTTTCTACGGATGAGATGGAAACTTTAGATGAAATAAGATCTTTTGTTGGGGATGATGAAAACAATGGCTCAAACTCAATTGCTGAATTTCCATTGCTCACCAAGAATGCAGTGGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAAAGTGTAACAAAAATAGCTGTCCGTGAATCACGAGCCCAGGATTTGAGGAACGAAATTCTGAACTCTGAAAAGTTGAAGGCCCACTTTGAATCTAATCCACGGGACCTAGATCTGTTGAAGCATGACAAAGTTTTGAGCAAAAATGCCCCTCCTGCGCACCTACGTGATGTGCCAGACTACCTAGTAGACAAAACAACGAAAGAGGCGAGGGAAATGGTCAAGCTTGCTAGGGACGCAATGGGTAATAATAGTAGGTTCCGGAGATCCAAGAGAAAGTTCAGAAAAGGTGGAGACCCTCTGAAGGCTATATCTGCTAAGGTATCCAAAAGATCACAGAAAGGTGATGGACATAAACGGAAGAGGAAAAGCGAAGCTTGA 1950 0.4215 MEEGVRSWARVKRAFIPFINGFFQIGMDVIMWLGPLPHPSRTAHTGGHITRHFKLCAQLVLMAETSENTSKETVREYEVMEDQTFEELGLDARLIRALLKKGIEKPTPIQRVGIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNVQRKKLAPNAFILVPTRELCQQVYAEVVSLIELCRVQLKVVQLTGNMRASDLRTALTGPPDVLISTPACIAKCLSTGILQAASINSSLETLVLDEADLLLSYGYENDIKAFTAHIPRSCQCLLMSATSNADVDKLKKLILHNPFILTLPEVGNQKDEVIPKNVQQFWISCPARDKLLYILSLLKLGLVQKKVLIFTNSIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHAKEKDEAIKESNGELRRSKKHVKQKLDSEFGVVRGIDFKNVYTVINFEMPQSVEGYVHRIGRTGRAYNSGCSVSLVSTDEMETLDEIRSFVGDDENNGSNSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPAHLRDVPDYLVDKTTKEAREMVKLARDAMGNNSRFRRSKRKFRKGGDPLKAISAKVSKRSQKGDGHKRKRKSEA 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0572 649 Gene3D - 58 297 IPR027417 -
Dere09g0572 649 Coils Coil 536 556 - -
Dere09g0572 649 MobiDBLite consensus disorder prediction 605 649 - -
Dere09g0572 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 296 IPR027417 -
Dere09g0572 649 SMART ultradead3 102 315 IPR014001 -
Dere09g0572 649 CDD SF2_C_DEAD 312 475 - -
Dere09g0572 649 Pfam Helicase conserved C-terminal domain 323 466 IPR001650 -
Dere09g0572 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 491 IPR027417 -
Dere09g0572 649 PANTHER RNA HELICASE 68 591 - -
Dere09g0572 649 SMART helicmild6 352 466 IPR001650 -
Dere09g0572 649 Pfam DEAD/DEAH box helicase 107 284 IPR011545 GO:0003676|GO:0005524
Dere09g0572 649 CDD DEADc_DDX56 90 297 - -
Dere09g0572 649 Gene3D - 299 504 IPR027417 -
Dere09g0572 649 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Dere09g0572 649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 512 IPR001650 -
Dere09g0572 649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 295 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0572 Dere-ChrDere09 8609040 8617961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0572 84 506 Eukaryotic Initiation Factors Gene Family AT3G19760 25.532 1.96e-36 139