Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0562 ATGGGTCTTGGTGATGCTGCTAGTAACTCTGGCCTTCACCTCGTTCTAGGGTTAGGTTTGACTGGTGCTCCATCCAAGGCTGATAATAATACTAGGCCAATTAAGAGCTCCACCAATTTCACGGCAACAAGTAGTTGTGAGCCATCCTTAACTTTGGGTCTTTCAGGCGAGACTTACCAACAAGTCCCCAAAAAGATTGATGCGAACAAAAGTCATGAGGACCCTCTTGACTTTTCTCGCCAAACATCACCTCACAGTGCCGTTTCGTCCTTCTCCAGTGGGAGGGTGAAGAGGGAGAGAGATCTCAGCAGCGAAGAAATTGAGGCAGCGGAAAGGGTCTCCTCAAGAGTGAGTGATGAAGATGAAGATGGCACCAATGCCAGAAAGAAGCTCAGACTTACCAAAGAACAATCTGCTTTGCTAGAGGAAAGCTTCAAACAACATAGCACTCTCAATCCTAAGCAAAAGCAAGCTTTAGCCAGGCAGTTAAATCTAAGGCCACGACAAGTTGAAGTGTGGTTCCAAAATCGGAGAGCCAGGACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCTTAAAGAAATGCTGTGAGACGCTGACGGATGAAAATAGGAGGCTGCAGAAGGAGGTTCAAGAGCTGAAGGCATTGAAACTACCCCAACCTTTGTATATGGCTATGCCGGCGGCCACCCTCACCATGTGCCCATCTTGCGAGAGGCTGGGTGGTGTCACTGGCGACGGCACATCCAGCAAGAATCCATTCTCGATAGCTCCCAAGCCTCATTTCTACAGCCCCTACCCCAATCCTTCTGCAGCATGCTGA 825 0.4909 MGLGDAASNSGLHLVLGLGLTGAPSKADNNTRPIKSSTNFTATSSCEPSLTLGLSGETYQQVPKKIDANKSHEDPLDFSRQTSPHSAVSSFSSGRVKRERDLSSEEIEAAERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLPQPLYMAMPAATLTMCPSCERLGGVTGDGTSSKNPFSIAPKPHFYSPYPNPSAAC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0562 274 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 251 - -
Dere09g0562 274 MobiDBLite consensus disorder prediction 20 129 - -
Dere09g0562 274 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Dere09g0562 274 Coils Coil 190 217 - -
Dere09g0562 274 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Dere09g0562 274 FunFam Homeobox-leucine zipper protein 18 113 189 - -
Dere09g0562 274 SMART HOX_1 126 188 IPR001356 GO:0003677
Dere09g0562 274 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Dere09g0562 274 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Dere09g0562 274 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Dere09g0562 274 CDD homeodomain 128 185 IPR001356 GO:0003677
Dere09g0562 274 Gene3D - 132 182 - -
Dere09g0562 274 SUPERFAMILY Homeodomain-like 118 185 IPR009057 -
Dere09g0562 274 MobiDBLite consensus disorder prediction 24 65 - -
Dere09g0562 274 MobiDBLite consensus disorder prediction 94 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0562 Dere-ChrDere09 8480111 8481309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0562 1 274 Homeobox Transcription Factor Family AT4G37790 61.592 3.40e-103 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere09g0562 Homeodomain 1.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0562 09 8480111 8481309 Dere13g0369 13 4890804 4892050 CCT