Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0550 ATGAGAGTGAAGAGAGGAGATAGTCCAGGAGAGGCCGAATTGGAACAGTGTCAACTACCAGAAAGAAAATTAAGAAACCATTTTCACACGTGGTGGATACAATACGGTGCTGCATATCCCAATTCGGAGGAAAAAGAGATTGAAATGATGGAAATTTCATCCAAGTACTTTGCCGAGCTAGGAATGGAGGACCCGAGTTTGTTCGAGCAGTACCCCGTGGATTGCCTGGGATACGGGGTTGATGGGGTGGAGATGCAGTGTTTGTCGGGATGCGGGGATAGCTATTCAGGTTATAACAATGAGTGTTTCAACTCCAAACGAAGCCGTGATTGGTTGCCAGTGAAGAGTCCTGAATCGGTTGCCCCACCACGAGCACCCAAGCAACTCAAGAGCGTCCAAAATAGCTGGAACTCTTGCACCACCACTGACCCCATCGTCCCTCCCAACCTTTCTGCTTCTAATTCCACCTCCCAAATCATTTCTTTCGACACATCTGACTCATCGCCTGACCACTTGTACAGCTTGGATTCTAGTGCTGTCAAGCCTAAAACCGAGACTGTCTCCACCGACAACTTGGATTTCAGGGCTCCTTTTTTCATTTCTCAACCCACCTACGATCATCGCCACAACCCTGATTCGCTTTTGCTTGCACATGACAAAAAAACTGCCGCCATCACCCGAAATCCAACGCAAGCTCAAGATCACGTCATGGCCGAAAGAAAACGAAGGGAAAAGCTCAGTCAGAGGTTCATTGCGCTTTCCGCCATTCTTCCTGGCCTCAAAAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAATCAAGTATGTAAAACAACTGCAGGAGCGCGTGAAGACTTTGGAGGAACAGGTAGCCAAGAAAACCGTGGAATCTGCAGTGTTTGTGAACAGGTCTATTCTCTTCGCCGAGGATGATGGCTCCTCATCCGATGAGAATTCCAACAGCCGCTCCGATCAGCCACTCCCCGAAATCGAAGCAAGAGTTTCGGGCAAGGAGGTACTCATCAGAATCCACTGCGACAAACACAACGGGTGTGCCGCTGCTATACTCTCCCAGTTACAACAACTTCATCTCACAGTCCAGAGTAGCAGCTTCTTGCCCTTCGGAAATACCACTCTTGATATCACTATTGTTGCTCAGATGAACAAGGAAGAGTGCGTGACAGCAAAGGATATAGTAAGAAGCCTAAGGCAGGCTCTGAGACAGTTCATTTGA 1233 0.4834 MRVKRGDSPGEAELEQCQLPERKLRNHFHTWWIQYGAAYPNSEEKEIEMMEISSKYFAELGMEDPSLFEQYPVDCLGYGVDGVEMQCLSGCGDSYSGYNNECFNSKRSRDWLPVKSPESVAPPRAPKQLKSVQNSWNSCTTTDPIVPPNLSASNSTSQIISFDTSDSSPDHLYSLDSSAVKPKTETVSTDNLDFRAPFFISQPTYDHRHNPDSLLLAHDKKTAAITRNPTQAQDHVMAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYVKQLQERVKTLEEQVAKKTVESAVFVNRSILFAEDDGSSSDENSNSRSDQPLPEIEARVSGKEVLIRIHCDKHNGCAAAILSQLQQLHLTVQSSSFLPFGNTTLDITIVAQMNKEECVTAKDIVRSLRQALRQFI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0550 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 295 IPR036638 GO:0046983
Dere09g0550 410 Coils Coil 269 296 - -
Dere09g0550 410 FunFam Basic helix-loop-helix family protein 227 296 - -
Dere09g0550 410 Pfam Helix-loop-helix DNA-binding domain 233 280 IPR011598 GO:0046983
Dere09g0550 410 SMART finulus 236 285 IPR011598 GO:0046983
Dere09g0550 410 CDD bHLH_AtNAI1_like 232 304 - -
Dere09g0550 410 Gene3D - 221 294 IPR036638 GO:0046983
Dere09g0550 410 MobiDBLite consensus disorder prediction 310 329 - -
Dere09g0550 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Dere09g0550 410 PANTHER BHLH TRANSCRIPTION FACTOR 119 408 - -
Dere09g0550 410 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0550 Dere-ChrDere09 8379750 8381797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0550 49 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.757 1.17e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g0550 HLH 6.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0550 09 8379750 8381797 Dere13g0351 13 4760858 4762702 CCT