Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0543 ATGGCTCCTCCAGAGATTGGCCTTGCGTCCATGACCCACCACCCTCCAAATCCTCCAAACCCTAACTCCTCTTCCTCCGCCTCCTGGATGTGGAACCCTAGGGAGCACCCAGAAGACGATGACTCGTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGAAACGTCATGGGCACCACTTGGCCTCCCCGCTCCTACACCTGCACCTTCTGCAGAAGGGAGTTCCGTTCAGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGTGACCGGGCCCGCCTCCACCAGGTCCACCCCAACTCCTGTCCCACTTCCTCATTCGTAATCCCAACGCAAGACCTCCTTCCTAATGCCGGATTATGCCTTCTCTACCGTTTACCAACCCCTAATAATCCTACCTTTACCTTTGGTACGACTCCCACTCCCTCTTCCACTGCATGTGAGGAATCACCCTCCACCCTCCTCTCCATCTCGCCCCTTCCTCCGAACAACTTTGATTTTCCAGTGCTACGCTCAGGCTGCAGTATTTCCTCTTACTCTAGCTCTACTAAAGTGGAACTGCCCACCAACGCCTCCAATGATGGCCACGAAGAGCTTGATCTAGAGCTCCGCCTGGGCCACAGGCCAACACCAACCTGA 639 0.5618 MAPPEIGLASMTHHPPNPPNPNSSSSASWMWNPREHPEDDDSWEVRAFAEDTRNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQVHPNSCPTSSFVIPTQDLLPNAGLCLLYRLPTPNNPTFTFGTTPTPSSTACEESPSTLLSISPLPPNNFDFPVLRSGCSISSYSSSTKVELPTNASNDGHEELDLELRLGHRPTPT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0543 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Dere09g0543 212 PANTHER OS07G0101800 PROTEIN 37 209 - -
Dere09g0543 212 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Dere09g0543 212 SMART c2h2final6 65 87 IPR013087 -
Dere09g0543 212 Gene3D Classic Zinc Finger 55 104 - -
Dere09g0543 212 Pfam C2H2-type zinc finger 65 89 - -
Dere09g0543 212 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Dere09g0543 212 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0543 Dere-ChrDere09 8302544 8303182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0543 25 209 C2H2 Transcription Factor Family AT4G17810 40.952 2.61e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere09g0543 zf-C2H2_6 4.2e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0543 09 8302544 8303182 Dere09g0543 09 8302544 8303182 ECH