Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0541 ATGGCTGGTCTGGATTTAGGAACTGCTCGCTTTGTTCAAAATCTTCACAGACCCGACTTGCATCTTCAGCAGCAGCATCAACCCGATTCCGAAGAAGATGGCAACCAGGCTGCCCCTTTTTCCTCCGAAGATGGTCCCCACCAAGGCCTCGAGCTCGCCTCCGGCTCCGGAGGTCCCGGCGACATCGTTGGCCGCCGACCCCGTGGCCGCCCTCCTGGTTCCAAAAACAAGCCCAAACCACCCGTCATCATCACCAGAGAAAGCGCCAACACCCTACGCGCTCATATTCTGGAAGTCGCCAGCGGCTGCGACGTCTTCGACTCCGTCGCCACCTACGCCCGTCGCCGCCAGCGCGGGATCTGTATTCTGAGCGGCAGCGGCACCGTCACCAATGTGACCTTGAGGCAGCCGGCAGCGGCTGGAGCCGTCGTCACCCTTCACGGAAGGTTCGAGATATTGTCACTGTCGGGGTCGTTCCTGCCGCCGCCTGCCCCACCAGGTGCGACGAGCCTGACGGTATACTTGGCGGGAGGACAAGGACAAGTGGTGGGAGGGAGTGTAGTGGGAGAGTTGACGGCAGCAGGACCGGTGATAGTGATCGCAGCATCGTTCACGAACGTGGCGTACGAGAGGTTACCCTTGGATGATCAGGAGGAGCAGCTCCAGATGCAGCCACCTGCTGCTTCTTCTCAGGGATCGGGTGCTGCTTCGGCTTTCCCTGACCCTTCCTCCGGTCTGCCCTTCTTCAATTTGCCCCTTAATATGCAGATGCCTGTGGATGGGTGGGCCGGAAACTCAGCCCCACGTCCTCCATTTTGA 819 0.602 MAGLDLGTARFVQNLHRPDLHLQQQHQPDSEEDGNQAAPFSSEDGPHQGLELASGSGGPGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGCDVFDSVATYARRRQRGICILSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDDQEEQLQMQPPAASSQGSGAASAFPDPSSGLPFFNLPLNMQMPVDGWAGNSAPRPPF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0541 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 227 IPR014476 GO:0003680
Dere09g0541 272 MobiDBLite consensus disorder prediction 218 239 - -
Dere09g0541 272 MobiDBLite consensus disorder prediction 222 238 - -
Dere09g0541 272 MobiDBLite consensus disorder prediction 15 82 - -
Dere09g0541 272 FunFam AT-hook motif nuclear-localized protein 92 220 - -
Dere09g0541 272 Gene3D - 92 225 - -
Dere09g0541 272 CDD DUF296 93 176 IPR005175 -
Dere09g0541 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 220 - -
Dere09g0541 272 ProSiteProfiles PPC domain profile profile. 89 226 IPR005175 -
Dere09g0541 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 206 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0541 Dere-ChrDere09 8283115 8283933 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0541 1 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.340 6.83e-102 297