Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0538 ATGGACTCTCGGGAACCGCCTCGGCCTCCACAACCGCCACACTTACAATCGCAACCGCCATCAGTGCCACCCAACATGATGGGACCACCACTTTCCTATCCCTCCGCTATGGCCAACCCCAACACTTCTTCCATGATCAACCCCAATTCCACGCCTATGATGATGGCGCCTGCCACCGCCCGATTCCCCTTTAACTCCCTTGTCCGACAACCCCATCCTCCTCCTCCTCCTGCATCTAAGCCTTCCGAACCCTTAAATAGCACTCCTCCCTACGACGCCTCCTCCTCTGCGTTGAGGCCCTGCGGTTTTAGCATTGATTCTACCAAAAAGAAGAGAGGCCGCCCCAGAAAGTATTCGCCGGACGGTAACATTGCTTTGGGTTTGGCTCCCGCGCCTATGACTTCTTCTTGTCCCGGTGATTTGAGTGCCACGCCGTCCGGGGAACCCTCTGCTAAAAAGAATAGGGGAAGGCCACCGGGCTCTGGAAAGAAGCAGTTGGATGCTCTTGGAGCTGGCGGGATAGGCTTTACTCCACACGTAATCTTGGTGAAAACTGGCGAGGATGTTGCATCAAAGATTATGGCCTTTTCTGAACAAGGGCCACGTGCAATTTGTATTCTTTCTGCTAATGGTGCAATCTGCAATGCCACCCTTCGCCAGCCCACGATGTCTGGTGGTACAATGCGTTATGAGGGCCGATATGAGATTATATCTCTATCAGGTTCTTTCCTGCTATCTGATGGGGATGGTTGTAGCAGAATGGGTAATTTGAGTGCGTCTCTTGCATCGGCTGATGGAAAAGTTGTGGGTGGTGTAGTTACTGGAATGCTGATTGCAGCATCACCGGTGCAGATAATTGTGGGTAGCTTTATTTCGGATGGGAAAAAGTCGAGCCCAAATATGGTGAAATCTGGGCCTTCCTCAGTACCGGGGGCCCAAATGTTAAATTTTGGTGCGCCCATGACTTCAGCCAGTCCTACGTCTCAAGGGGCTTCAAGTGATTCCTCTGATGACGACGATGACAGTCCTTTTCATAGAGGGACTAGGCCTGGGCCTGGAGTCTTCAATAATGTTAGTCAGCCCATTCATAGTATGCAGTGGAATCATCCTCAACTATGGGCCGGCCAAACTCAGCAGTGA 1140 0.5175 MDSREPPRPPQPPHLQSQPPSVPPNMMGPPLSYPSAMANPNTSSMINPNSTPMMMAPATARFPFNSLVRQPHPPPPPASKPSEPLNSTPPYDASSSALRPCGFSIDSTKKKRGRPRKYSPDGNIALGLAPAPMTSSCPGDLSATPSGEPSAKKNRGRPPGSGKKQLDALGAGGIGFTPHVILVKTGEDVASKIMAFSEQGPRAICILSANGAICNATLRQPTMSGGTMRYEGRYEIISLSGSFLLSDGDGCSRMGNLSASLASADGKVVGGVVTGMLIAASPVQIIVGSFISDGKKSSPNMVKSGPSSVPGAQMLNFGAPMTSASPTSQGASSDSSDDDDDSPFHRGTRPGPGVFNNVSQPIHSMQWNHPQLWAGQTQQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0538 379 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 345 IPR039605 GO:0003680
Dere09g0538 379 MobiDBLite consensus disorder prediction 295 361 - -
Dere09g0538 379 SUPERFAMILY AF0104/ALDC/Ptd012-like 176 292 - -
Dere09g0538 379 CDD DUF296 177 290 IPR005175 -
Dere09g0538 379 MobiDBLite consensus disorder prediction 1 167 - -
Dere09g0538 379 MobiDBLite consensus disorder prediction 318 333 - -
Dere09g0538 379 MobiDBLite consensus disorder prediction 8 30 - -
Dere09g0538 379 MobiDBLite consensus disorder prediction 35 54 - -
Dere09g0538 379 ProSiteProfiles PPC domain profile profile. 172 311 IPR005175 -
Dere09g0538 379 SMART AT_hook_2 152 164 IPR017956 GO:0003677
Dere09g0538 379 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Dere09g0538 379 MobiDBLite consensus disorder prediction 295 311 - -
Dere09g0538 379 MobiDBLite consensus disorder prediction 68 84 - -
Dere09g0538 379 Pfam Plants and Prokaryotes Conserved (PCC) domain 178 290 IPR005175 -
Dere09g0538 379 Gene3D - 178 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0538 Dere-ChrDere09 8246704 8250969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0538 103 330 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 54.231 1.63e-74 236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0538 09 8246704 8250969 Dere13g0341 13 4633700 4638535 CCT