Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0534 ATGCAGGACCACACGCTGAAAAGTGAAAACCTCACTGGCTCTGCTTCTGCTTGCATTCTATTTCCACATCTTCAAGTAGCGTTTTATTTACGGACGGACCTGATTGCCCTGTTCAGGCAACGTGGCTCGTCATCAACCATCGAACTCCCGAATTGTGAAAATGAGAGGAAGAGTTGTATTCTGAGTGTAGAGTTTAGAAGAGAAAGATCATATTTTTTAAGCTTTATAATGCCAGTTCCACTTGCCCCCTACCCGACGCCACCAGCTCCATATACGCCTCCAGCAAATGGTGCACAGAGTCAGCTTGTGTGTTCTGGGTGTAGAAACCTTCTGATGTATCCTGTTGGAGCCACCTCTGTATGCTGCGCTGTTTGCAACGCAGTCACAGCTGTGCCTCCTCCCGGCACAGAAATGGCCCAGTTGGTCTGTGGAGGTTGCCACACTCTACTCATGTACATACGTGGAGCCACAAGCGTGCAATGCTCTTGCTGTCACACCGTCAATCTAGCTTTGGAAGCAAATCAACTGGCGCATGTCAACTGTGGGAACTGCAGGATGCTACTGATGTACCAATATGGAGCACGATCCGTGAAATGCGCTGTTTGCAATTTTGTAACATCAGTTGGGGTCTCAGCAAGCACGACTGAGCAGAAGTTCAGCGCCTAA 666 0.488 MQDHTLKSENLTGSASACILFPHLQVAFYLRTDLIALFRQRGSSSTIELPNCENERKSCILSVEFRRERSYFLSFIMPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQLAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSASTTEQKFSA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0534 221 PANTHER PROTEIN LSD1 92 131 IPR040319 -
Dere09g0534 221 NCBIfam zinc finger domain, LSD1 subclass 101 131 IPR005735 -
Dere09g0534 221 NCBIfam zinc finger domain, LSD1 subclass 178 208 IPR005735 -
Dere09g0534 221 NCBIfam zinc finger domain, LSD1 subclass 140 169 IPR005735 -
Dere09g0534 221 Pfam LSD1 zinc finger 104 128 IPR005735 -
Dere09g0534 221 Pfam LSD1 zinc finger 181 205 IPR005735 -
Dere09g0534 221 Pfam LSD1 zinc finger 143 167 IPR005735 -
Dere09g0534 221 SUPERFAMILY Multiheme cytochromes 104 202 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0534 Dere-ChrDere09 8212729 8215404 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Dere09g0534 zf-LSD1 1.6e-11 No_clan