Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0532 ATGGGTTGCACTGGAAGGGAAAAACACATCCGAGCGAATCGGAAACCTCGATCAGTCAAACCTGATACAGATATCTGCTGTCTAGACAGATTTTCAATCTCCAAATCTATAATGGAATCAGGCCTCACGCCGTTGAAATGCCATCTGGGTCTCAATGATTCGACTCAAAAGCCAGTTCCCAATTCAAACCCTAGCCTAAACCCTAACCCTAACATCGACGAAAGTGGCTGGGGTTACTGTACAGAAGAACAATTGGAAGAAATTCTACTGAAAAACTTGGAAATTTTATACAATGAAGCTGTACCAAAACTTGTTGCATTGGGGTACGACGAGGACGTTGCTTTAAAAGCAGTATTGCGAAATGGGCATTGTTATGGTGCGATGGATGTGTTGACAAATATATTGCATAACTCATTGGCTTATTTAAATAGTAATTGTGGTGGTGGTAGTACTAGTGATGGCAATTCGGATGCGTCAGAGCCTGTGTTCTCAGACTTGAGGCAGTTGGAGGAGTACTCTCTAGCGGGTATGGTCTGTCTCTTGCAACAACTAAGGCCCCATTTGAGTAGAGGTGATGCCATGTGGTGTTTACTTATGAGTGATCTTCATGTGGGAAGGGCAAACACTATGGAAATACCAGTGCTTCCTGCGCCAGGCGATGTTAGTCCTGCTTCTACTACAGTCGAGACTGTTACCAATTCAGTCGATGTTATGGCCCCATCTCTTTGTAGGGTTCATGGGGATTGGGGATTTGCAAATGGTGGAGGCTCAGATTTCCCTGCCAATGGATTATTCTCTTGCAGTGCAGACGTGACTTTACAAAGAGATATTGAATTCCCAAAGAGGTTTAATCTTTCTCCCTCTATGAAGGCCTTGTTGAAAAGAAATGTGGCATTGTTTGCTGCTGGTCTAAGGGCAAACTCAAAACAATTGCAGACACAAGTAAAAGCATGTCCCAGCAATAGCTCATTGTCAATTTTAGATTCGCCTGCTATACTGGGGACTGAAATTCCAGTTGAGCAGTCTGGGAATTCTCAGAATCTGAATAACCAAGATGCTGTGAATTCAGTTCTGAGTAAATTTCGTGATCTAAATCTTGATGAGAATTTGGAGTCTGTGGCAGAAGATCAGAAGGATGAGATGATTTTCACTCTATTTCATCAGATTAAAGATCTTGAGAAACAGGTAAAGGAGCGAAAGGATTGGGCCCAACTTAAGGCATTGCAGGCTGCGAGAAAGCTGAGCAGTGATCTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAAGAGACTCAGAAATTGAAGAAAGGGAAACAGGCCCTTGAGGATACAACTATGAGAAGACTCTCAGAGATGGAGAATGCATTGAGAAAGGCTAGCGGTCAAGTGGACCGTGCCAATGCAGCAGTGAGAAGACTTGAAACTGAAAATGCTGAAATCAAAGCAGAGATGGAGGCTTCTAAATTGAGTGCATCAGAGTCAGTCACAACTTGTTTGCAGGTTGCAAAAAGGGAGAAAAAGTGTTTGAAGAGGCTTCTAGCTTGGGAAAAACAGAAAGCGAAGCTGCAGCAGGAGATTTCAGATGAGAAGGATAAAATATTGGAGATACAAGAAGTAATGGTTCGGATAAAACAATGTCAGAGAGAAGCCAAGATCAAGTGGAGGGAGGAGTTGGAGGCTAAAGAGGAAGCCTTAACACTAGCTGACGAGGAAAGGCGCGTAAAGGAAGAAGCTGAGGCTAATAATAAGAGGAAGCTTGAGGCTTTGCGCTTAAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCTAAGACTTGAGCAGGAACTTTTGCACCTTAAAGCATCTACTCAGCCTGCTGAGTTGCATCACCAATCAAATAGTTCACCTACTTGTGAGTCGGAGGGTGCAAAGCCCCAGAGAGTGACAATTGCTAAGATGCTTCAAGAATTAGATAAACAGGAGGATATTTCCGAGAACGAAGACAACTGTGATAGGGGATGCATTATATGTATGAAAGATGAAGTCTCTGTTGTTTTCCTGCCGTGCGCACACCAAGTTGTGTGTGCTAGTTGCTGTGATGAGTTTGGGAGAAATGGCAAAGCTACTTGTCCTTGCTGCCGGGTTTCAATTGAACAGATGATCCGTGTATTTGGGGCAAGTTCGTAG 2172 0.4355 MGCTGREKHIRANRKPRSVKPDTDICCLDRFSISKSIMESGLTPLKCHLGLNDSTQKPVPNSNPSLNPNPNIDESGWGYCTEEQLEEILLKNLEILYNEAVPKLVALGYDEDVALKAVLRNGHCYGAMDVLTNILHNSLAYLNSNCGGGSTSDGNSDASEPVFSDLRQLEEYSLAGMVCLLQQLRPHLSRGDAMWCLLMSDLHVGRANTMEIPVLPAPGDVSPASTTVETVTNSVDVMAPSLCRVHGDWGFANGGGSDFPANGLFSCSADVTLQRDIEFPKRFNLSPSMKALLKRNVALFAAGLRANSKQLQTQVKACPSNSSLSILDSPAILGTEIPVEQSGNSQNLNNQDAVNSVLSKFRDLNLDENLESVAEDQKDEMIFTLFHQIKDLEKQVKERKDWAQLKALQAARKLSSDLTELKMLRMEREETQKLKKGKQALEDTTMRRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCLQVAKREKKCLKRLLAWEKQKAKLQQEISDEKDKILEIQEVMVRIKQCQREAKIKWREELEAKEEALTLADEERRVKEEAEANNKRKLEALRLKIEIDFQRHKDDLLRLEQELLHLKASTQPAELHHQSNSSPTCESEGAKPQRVTIAKMLQELDKQEDISENEDNCDRGCIICMKDEVSVVFLPCAHQVVCASCCDEFGRNGKATCPCCRVSIEQMIRVFGASS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0532 723 ProSiteProfiles Zinc finger RING-type profile. 669 709 IPR001841 -
Dere09g0532 723 CDD RING-HC_MIP1-like 666 718 - -
Dere09g0532 723 MobiDBLite consensus disorder prediction 1 20 - -
Dere09g0532 723 PANTHER OS05G0141500 PROTEIN 1 718 IPR046934 -
Dere09g0532 723 Coils Coil 449 490 - -
Dere09g0532 723 SUPERFAMILY RING/U-box 656 715 - -
Dere09g0532 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 720 IPR013083 -
Dere09g0532 723 MobiDBLite consensus disorder prediction 620 637 - -
Dere09g0532 723 Coils Coil 597 617 - -
Dere09g0532 723 MobiDBLite consensus disorder prediction 618 639 - -
Dere09g0532 723 Coils Coil 512 539 - -
Dere09g0532 723 Pfam Family of unknown function (DUF6592) 92 207 IPR046527 -
Dere09g0532 723 Coils Coil 551 588 - -
Dere09g0532 723 Pfam Zinc finger, C3HC4 type (RING finger) 667 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0532 Dere-ChrDere09 8175721 8178635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0532 669 719 C3H Transcription Factor Family AT1G73950 41.176 5.17e-06 47.8