Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0505 ATGGTTCATCAACATTTAGACGCAGTCTGCGTATTCTGTGGGGACGAAGAAGCATTTTCTTTTCACCGAAGGCGGAGATCTTACCCGGGCCTCCGTCTGTTTGTTGTTCTATTAAAGTGCCACCTCCAGAATAGATTAAGTAATATGCAAGGCAGTGGGCCTGAGAACGATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCACTTCTGCTGCCGATATAAGAGCAAAGCTCGAAGCCATGGACTATATTGTTTCTATATTCTGCAATGAGAACGAAGCGTTGTCAGCAATCTCAAGAAAACCTGTAGGCTTCCATGTTGCCATAGTGGAGGTTAATACAAGCGATAGCAAAGGATGTTTCAGATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCCTCAGCACCATGATGAAGTGTATAGCACTTGGTGCAGTTGAGTTCCTGAGCAAACCACTCTCCGAGGACAAGCTTAGGAATATCTGGCAGCATGTGGTTCACAAGGCATTTAATGCTGGGGCAAGTGTCCTGTCTGAATCACTAAAACCCGTCAAGGAATCTGTAGTATCAATGTTGCAGCTCCAAACAGACAATAAAGAACAAGAAAGTAAAATATCAATAGATTTAGAAAAGGTATCAAGGTTTAGTGATAATGATCATGAACTGTCAGCTGAGAGTGATAATAAATACCCAGCTCCTTCAACTCCACAATTAAAGCAGGGGGCTAGATTACTGGATGATGGAGATTGCCATGAACAGACTCATTGTTTGACTGAAAAGGAAAGTGGAGAACATGACGGGGAATCTAAATCTGTCGAAATTACATGTGGGAATTTGAATTCTGAAGTTACTACTCAACCAAGGAAAGCTGACAAATCTCTGCTAAAGAAGGAAGAGGACTTTGCCAATGGTCCTAAAAGTGACAGTGATGCTTCTCCACGTCTGCATGATAGAAATTTTGTCAGTAGCATTGATGATGGTACATATCCAAATAGAGTAGATGTTCTCAATGATACATGTGTGGTCAAAGCTAATAGGAAGAAATCCAAGAAAATGAAGGTCGACTGGACACCTGAGCTGCACAAAAAATTTGTTCAGGCAGTAGATCAACTAGGTGTTGATCAAGCCATACCTTCTCGAATACTGGAGCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCTAGCCATCTTCAGAAGTATAGAATGCACAAGAGACATATTTTGCCCAAGGAAGAAGATCGAAGATGGCCACATCAAAGAGATATAATGCAAAAGAGCTATTATGTACCAAGACCGGTTATGGCCATCCCACCATATCATTCTAATCACGCCCTATCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGCAGTCAACCGGCTAGTGTACAGATGTGGGGGCCGCCTAACTATCACCTATGGCAGCCTTTTCCAGGGTTGCATGCAGAAGCATGGGGTTGCCCAGTGTTGCCACCTTCTCAAGGTCCTTGTTTTTCCCACACTCAACATATGCCTGAAGTGCACAGTGCTAATAATGTTGAGCATGGCTCTAGCATGCCGCAAAGTTCATTTGAGCATCATCCAGCAGATGAAGTTGTTGACAAGGTAGTGAAGGAGGCAATAAGCAAGCCATGGCTACCCTTGCCCTTGGGCCTCAAACCTCCTTCCACAGATAGTGTATTGGCTGAGCTCTCTAGGCAAGGCATATCCACCATCCCTCATAGAACCAAGGGTTCTAGATCTAAACCCAGCTGA 1845 0.439 MVHQHLDAVCVFCGDEEAFSFHRRRRSYPGLRLFVVLLKCHLQNRLSNMQGSGPENDAKPAMVCTANDLQGWKDFPKGLRVLLLDGDTTSAADIRAKLEAMDYIVSIFCNENEALSAISRKPVGFHVAIVEVNTSDSKGCFRFLENAKDLPTIMTSNNHCLSTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASVLSESLKPVKESVVSMLQLQTDNKEQESKISIDLEKVSRFSDNDHELSAESDNKYPAPSTPQLKQGARLLDDGDCHEQTHCLTEKESGEHDGESKSVEITCGNLNSEVTTQPRKADKSLLKKEEDFANGPKSDSDASPRLHDRNFVSSIDDGTYPNRVDVLNDTCVVKANRKKSKKMKVDWTPELHKKFVQAVDQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDRRWPHQRDIMQKSYYVPRPVMAIPPYHSNHALSPAPIYPMWGQPGSQPASVQMWGPPNYHLWQPFPGLHAEAWGCPVLPPSQGPCFSHTQHMPEVHSANNVEHGSSMPQSSFEHHPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISTIPHRTKGSRSKPS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0505 614 FunFam Two-component response regulator-like APRR2 78 204 - -
Dere09g0505 614 Pfam Response regulator receiver domain 81 188 IPR001789 GO:0000160
Dere09g0505 614 NCBIfam myb-like DNA-binding domain, SHAQKYF class 378 433 IPR006447 GO:0003677
Dere09g0505 614 ProSiteProfiles Response regulatory domain profile. 80 193 IPR001789 GO:0000160
Dere09g0505 614 Gene3D - 374 436 - -
Dere09g0505 614 MobiDBLite consensus disorder prediction 595 614 - -
Dere09g0505 614 SUPERFAMILY CheY-like 77 195 IPR011006 -
Dere09g0505 614 FunFam Two-component response regulator 374 437 - -
Dere09g0505 614 MobiDBLite consensus disorder prediction 285 346 - -
Dere09g0505 614 MobiDBLite consensus disorder prediction 245 267 - -
Dere09g0505 614 Gene3D - 73 199 - -
Dere09g0505 614 MobiDBLite consensus disorder prediction 316 346 - -
Dere09g0505 614 PANTHER TRANSCRIPTION ACTIVATOR GLK1 62 605 IPR044825 GO:0003700|GO:0045893
Dere09g0505 614 Pfam Myb-like DNA-binding domain 381 430 IPR001005 -
Dere09g0505 614 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 375 434 IPR017930 -
Dere09g0505 614 MobiDBLite consensus disorder prediction 300 315 - -
Dere09g0505 614 SUPERFAMILY Homeodomain-like 377 435 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0505 Dere-ChrDere09 7947088 7952705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0505 62 603 Response Regulator Gene Family AT4G18020 49.739 4.06e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere09g0505 Response_reg 2.1e-07 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0505 09 7947088 7952705 Dere13g0319 13 4394958 4399780 CCT