Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0500 ATGCCCGCATCTTATTTCAAAGGCTTTCGTCTTTTTTCTTTCTCAAAAATCTATTCTAATCTTCAATCTCGTAGAAACCATTCTGTACCTCTCAAAGCTCAGGTGGCATTTTCCAGAAACAATGACCCAAAATCCATTTTTGATGATTCTCTACTCTTCCATTATCTATCTAAACAATGGCATCTGGAAGCACGAAGCTTTCTTGAAAAGTTCTGCGGGGCAGAGCTCCATGAACGAGTTGTTCTTTGGACGTCGTTGATTTCTAAATACTCGAGAGAGGGTTATGTGGACGAGGCTCGAGTGCTGTTTGACATTATGCCTCATAGAAATCTCGTTACTTATAATGCGATGTTATCAGGATATCTGCAATCAGGGAGGTTGAATGAGGCTTGTCGGTTTTTTGAGAAGATGCCGTATAAGAATGTTGTTTCGTGGACTTCAATGCTTAGTGGGTTAGAGGACGCGGGGAGGATTGAAGATGCAAGGAAATTGTTTGATGTAATGCCTGAGAAGAATATTGTTTCCTGGAATTCTTTGGTTGCGGGGTTGATTAGGAATGGAAGTCTGGAGGAAGCAAGGCAGGTCTTCAACCAAACTCCAGATAAAAATCTGGTTTCTTGGAATGCTATGGTTGCGGGTTATGCTGAAAATGGTAGAATGGAAGAAGCAAGAGTTTTGTTTGATGAAATGAAATGCAGGAATGTAATTACTTGGACTAGCATGATAGCTGGTTATTGTCGTGCAGGCAATGTGGAAGAGGCTTATTGCTTATTCCAGACAACGCCGGAGAAAAATGTTGTTTCTTGGACAGCCATGATTGGTGGGTTCACTTGGAATCGCTTATATGAAGAGGCCTTGTTGCTTTTTCTGAGAATGAGGTTTTCTGATGCAAAACCAAATAGAGAGACCTTCATTTCTCTCGCCTATGCATGTGCGGGCTTGGGTTTTCCGTGTCTCGGCAAGCAGTTACATGCTCAGGTGATTATTAACGGCTGGGAGCAAGATAATTTTGACGGTAGGTTATGTAGAAGTCTCATTCAGATGTGCTCTGTCTTGGGTCTCATGGACTTTGCTTACAATATCTTTGAGAAGAACCTGACTAACTGTGATAGTCACTCTATCAATTCTATGATCAATGGTTATATTCAGGTTGGTCAGTTACACAAGGCTCAAGTATTGTTTGACACGGTACCCATCCGAAACAGAATTGCATGGACTTGCATGATTACTGGCTATCTTAGTGCAGGAGAAGTATTAAAGGCATGCAATCTATTTAATGACATGCCTGAGAGAGATGCCATTGCATGGACTTCAATGATTTATGGTTATGTCCAAAATGAGCTTATTGCTGAAGCCATCAGCTTATTTGCAGAAATGAGGGCTCAGGGTGTTTGGCCTCTAAATTCTACATATTCTGTTCTTTTTGGAGCTATAGGTGCGATGGCTTATCTTGACCAGGGACGGCAGCTACATGGTCTGAAATTAAAGACGGTATATGAATATGACTTAATTCTTGAGAATTCTTTAATTTCAATGTACGCAAAATGTGGGGAGATAGATGATGCGTTTTACTTATTCTCTAACATGAGTTACCGGGACATAATTTCTTGGAACTCCATGATCATGGGCCTTTCAGATCATGGAATGGCCAGTGAAACATTAAAGGTGTATGAAACTATGCTTGAGCATGGGATTTACCCAGATTCTGTTACTTTTCTGGGCGTCTTGACAGCATGCAGTTATGCGGGGCATGTTGACAAAGGGTGGGAGTTGTTTAGTGCTATGACCAATGCTTATGCTCTTCAACCTGGCTTGGAGCATTACATTAGTATGATCAATCTTCTGGGCCGAGCTGGAAAGGTGAAGGATGCCGAGGAGTTTGTCTTAAGGCTGCCTATTGAACTAAATCGTGCCATTTGGGGGGCTCTGCTCGGGATATGCGGGTTGAGCAAAACAAATGCAGATATTGCCATGCATGCAGCCAAACAACTCCTTGAGTTGGATCCTTTTAATGCACCAGGCCATGTGGCTCTTGGTAATATTTATGCGGCAAATGGTAGGCACATTGAGGCGACAAATTTGAGGAAACAAATGAGTTTGAAAGGTGTGAGGAAGGCACCTGGATGTAGTTGGATAATCATGAGGGGGAGAGTTCATATTTTCTCATTGGGAGATAGATTACATCCACAAGTGGAAGAGATGTTATTGCTATTATCTGGAAACGAGACATTTTAG 2235 0.4188 MPASYFKGFRLFSFSKIYSNLQSRRNHSVPLKAQVAFSRNNDPKSIFDDSLLFHYLSKQWHLEARSFLEKFCGAELHERVVLWTSLISKYSREGYVDEARVLFDIMPHRNLVTYNAMLSGYLQSGRLNEACRFFEKMPYKNVVSWTSMLSGLEDAGRIEDARKLFDVMPEKNIVSWNSLVAGLIRNGSLEEARQVFNQTPDKNLVSWNAMVAGYAENGRMEEARVLFDEMKCRNVITWTSMIAGYCRAGNVEEAYCLFQTTPEKNVVSWTAMIGGFTWNRLYEEALLLFLRMRFSDAKPNRETFISLAYACAGLGFPCLGKQLHAQVIINGWEQDNFDGRLCRSLIQMCSVLGLMDFAYNIFEKNLTNCDSHSINSMINGYIQVGQLHKAQVLFDTVPIRNRIAWTCMITGYLSAGEVLKACNLFNDMPERDAIAWTSMIYGYVQNELIAEAISLFAEMRAQGVWPLNSTYSVLFGAIGAMAYLDQGRQLHGLKLKTVYEYDLILENSLISMYAKCGEIDDAFYLFSNMSYRDIISWNSMIMGLSDHGMASETLKVYETMLEHGIYPDSVTFLGVLTACSYAGHVDKGWELFSAMTNAYALQPGLEHYISMINLLGRAGKVKDAEEFVLRLPIELNRAIWGALLGICGLSKTNADIAMHAAKQLLELDPFNAPGHVALGNIYAANGRHIEATNLRKQMSLKGVRKAPGCSWIIMRGRVHIFSLGDRLHPQVEEMLLLLSGNETF 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 202 IPR002885 -
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Dere09g0500 744 FunFam Pentatricopeptide repeat-containing protein 171 233 - -
Dere09g0500 744 Gene3D Tetratricopeptide repeat domain 32 140 IPR011990 GO:0005515
Dere09g0500 744 SUPERFAMILY TPR-like 52 198 IPR011990 GO:0005515
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Dere09g0500 744 Pfam PPR repeat family 110 138 IPR002885 -
Dere09g0500 744 Pfam PPR repeat family 432 477 IPR002885 -
Dere09g0500 744 Pfam PPR repeat family 264 311 IPR002885 -
Dere09g0500 744 Pfam PPR repeat family 533 579 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 507 529 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 404 432 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 236 259 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 81 110 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 435 464 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 143 174 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 205 234 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 535 569 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 174 198 IPR002885 -
Dere09g0500 744 NCBIfam pentatricopeptide repeat 112 137 IPR002885 -
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Dere09g0500 744 Pfam E motif 653 712 IPR046848 -
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 431 IPR002885 -
Dere09g0500 744 Gene3D Tetratricopeptide repeat domain 324 399 IPR011990 GO:0005515
Dere09g0500 744 Gene3D Tetratricopeptide repeat domain 234 316 IPR011990 GO:0005515
Dere09g0500 744 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 75 137 IPR046960 GO:0003723|GO:0009451
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Dere09g0500 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Dere09g0500 744 Gene3D Tetratricopeptide repeat domain 400 500 IPR011990 GO:0005515
Dere09g0500 744 FunFam Pentatricopeptide repeat-containing protein 504 720 - -
Dere09g0500 744 FunFam Pentatricopeptide repeat-containing protein At1g32415, mitochondrial 234 332 - -
Dere09g0500 744 Pfam PPR repeat 375 395 IPR002885 -
Dere09g0500 744 Pfam PPR repeat 236 259 IPR002885 -
Dere09g0500 744 Pfam PPR repeat 205 235 IPR002885 -
Dere09g0500 744 Pfam PPR repeat 608 628 IPR002885 -
Dere09g0500 744 Pfam PPR repeat 507 532 IPR002885 -
Dere09g0500 744 Pfam PPR repeat 404 431 IPR002885 -
Dere09g0500 744 Pfam PPR repeat 143 173 IPR002885 -
Dere09g0500 744 Pfam PPR repeat 174 198 IPR002885 -
Dere09g0500 744 SUPERFAMILY TPR-like 184 691 IPR011990 GO:0005515
Dere09g0500 744 Gene3D Tetratricopeptide repeat domain 141 233 IPR011990 GO:0005515
Dere09g0500 744 Gene3D Tetratricopeptide repeat domain 501 718 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0500 Dere-ChrDere09 7908228 7910462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0500 121 734 Glycoside Hydrolase AT3G49170 28.492 2.08e-81 275