Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0480 ATGGGGTGTTTCTTCTTCAAAGGGAAAAAAGAATCCAAGCACTCCCCGGAATTGCAAACCCAAAGAAAGAAGAAAAATCCGGGTTCAAATCATGCAGTAAGGTCGCCGAGTTCGCTGCCATCACCAAGAACCATAACCGAATTGTACAAAGAGAAAGAGCACAATTTAAGAGTTTTCACTTTGCAAGAGCTTAGTGAGGCAACAAATGGTTTCAATAGGATGCTGAAGATCGGAGAAGGGGGTTTTGGCAGCGTTTATAAAGGTAAAATTAGGCCTCAAGATGGTCGGGTTGATCCCATTGTTGTTGCGATAAAAAGGCTCAATAACCGTGGCTTCCAGGGGCATAAACAATGGCTCGCAGAAGTTCAATTTCTGGGCATTGTTAATCACCCAAATATGGTAAAACTTTTGGGATACTGCTCTGAAGACGGAGAAAGAGGTATTCAACGGCTGCTGGTGTATGAGTTCATGCCCAACAGGAGCCTGGAAGATCATCTTTTCAGAAGGGCTCTTCCCACCTTACCCTGGAACACAAGACTGCAGATCATGCTCGGTGCTGCCCAAGGATTACGTTATCTACATGAGGGATTGGAGGTTCAGGTGATACACCGAGATTTCAAATCTTCAAATGTTTTATTGGACTCGGACTTCCACCCAAAGCTCTCAGATTTTGGTCTTGCTAGGGAAGGTCCAGTAGGTGATCAGACTCATGTGTCCACTGCGGTGGTTGGGACATACGGATACGCTGCCCCGGAATATATTGAGACGGGCCACCTCAAAGTTCAGAGTGAAATATGGAGTTTTGGTGTGGTACTGTATGAGATACTCACAGGGAGACGGGCTTTGGATAGAAGAAATCAGACAGAACAGAAGCTTCTAGAATGGGTTAAGCAGTATCCTGCTGACAGTCGCAGGTTCAGCATGATAATGGACCCTCGACTCAGAAATGAATATTCACAAGGTGCTGCTCGGAAAGTAGCCAAGTTGGCAGACAGCTGCTTAAATAAGAAACCTGAAGAAAGGCCATCCATGAGTCAAGTAGTGGAAAGCTTGAAGCAAGCATTGCAGTATTCAGAAACTCCAAAAATGGCTTCCGGATCATCTCGATCTAAATTGCTCCCCAAAAAACAAGTAGCGTAG 1140 0.4518 MGCFFFKGKKESKHSPELQTQRKKKNPGSNHAVRSPSSLPSPRTITELYKEKEHNLRVFTLQELSEATNGFNRMLKIGEGGFGSVYKGKIRPQDGRVDPIVVAIKRLNNRGFQGHKQWLAEVQFLGIVNHPNMVKLLGYCSEDGERGIQRLLVYEFMPNRSLEDHLFRRALPTLPWNTRLQIMLGAAQGLRYLHEGLEVQVIHRDFKSSNVLLDSDFHPKLSDFGLAREGPVGDQTHVSTAVVGTYGYAAPEYIETGHLKVQSEIWSFGVVLYEILTGRRALDRRNQTEQKLLEWVKQYPADSRRFSMIMDPRLRNEYSQGAARKVAKLADSCLNKKPEERPSMSQVVESLKQALQYSETPKMASGSSRSKLLPKKQVA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0480 379 Gene3D Transferase(Phosphotransferase) domain 1 157 372 - -
Dere09g0480 379 Pfam Protein tyrosine and serine/threonine kinase 76 351 IPR001245 GO:0004672|GO:0006468
Dere09g0480 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Dere09g0480 379 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 157 365 - -
Dere09g0480 379 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g0480 379 MobiDBLite consensus disorder prediction 358 379 - -
Dere09g0480 379 Gene3D Phosphorylase Kinase; domain 1 44 156 - -
Dere09g0480 379 CDD STKc_IRAK 77 353 - -
Dere09g0480 379 SUPERFAMILY Protein kinase-like (PK-like) 53 351 IPR011009 -
Dere09g0480 379 PANTHER OS01G0588500 PROTEIN-RELATED 26 355 - -
Dere09g0480 379 MobiDBLite consensus disorder prediction 1 42 - -
Dere09g0480 379 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Dere09g0480 379 MobiDBLite consensus disorder prediction 7 21 - -
Dere09g0480 379 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0480 Dere-ChrDere09 7608745 7611030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0480 3 351 Glycoside Hydrolase AT3G07070 41.667 1.47e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere09g0480 Pkinase 1.5e-48 CL0016