Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0477 ATGTATTACGGCACGGCCGTGGCAGGGAGAACTCGGTCTAGACTAACTCTCACTGGGAAACAAGACTTGGAGGAAAAGAATGAGCGTAAGAAGCGGAATGGGGGTGAGGAATTCGGGTCTGATTATGCCAGCGAAGAAGGGTGTTCAGTGTATTCTGAATCTGATGATGTGTTGTTAATAGAAGAACGCAACATTGATGCAGTTACTGTAGATGATGATGATGTGGTGGTAATAGAAGATAGCGACGTTGACACAATCCCAACGGATGATTATGGAGAGGGGGATGTGTTGTTTACTGTAGAACGGGACGAGGAAAGTCTACCGGGGAAAGAAGTGGAAAATGTTGAAAGAAGCGAGTCAATTGGGGAAAGTTTCCGGGCTAAGACTGGATCAAAGAGAAAAGAAGTATACGGTGATGAGAATGGCGTTCAAGATTGCAGATGCGTAGCACAAAGAACGCGATCTCATTTTAGTTCAAAATTTAGAACGTGGAAATCATTGGGAACATTTAGTAACCCGCTTTGTGTTGACGAAGAAGAGGAGGAAGTCGAGCCTCAAGGTGACCAATGTGATTTGGATGAAGATGATGGCGAAGTAAATCACTCTAGAAGGAAAACAAAGGCTACCAAAGAGAAAGTGGGCTCCTATGAGTTTTTCAATGGTAAATGCCTGAGTAAATCTGATGAAGGAAACATTAGTAATGATGAGAGCGAGGGTCTTGATTGCAAGAAGAAAGCACACAACGAGAAGCATGGAAGGAAAAAACACAAGGTGGACTCAAAAGATTTTGATGCGGTAAAGATTCTTCAGGAGTCTCTCTATGGCGAGGGGGAGGTTCCTCTTGAGAAGTTCGCATCCTCAAGTGATGAAGAAGGAAATCCAAAAGCTACCGAGACATTTCTACCATTGAAGTTTACTTTTGGGACCAAGGTGTCAAAACCACCGGAGAAATCAGAGTACGAGAAAGAATTGGATGAACTTTGGGCTGAGATGGACGAGTGTCTACGTGCTGGTTCTGGTCAGGTTGAAAATGATCATTTTTATGGCCCATGTCCAGAGGATGAAGTTAGCGGAGCTACTTGTGGACAGGAAAAAGTTAGCAGAGCTACTCTTTGTCAACAAGGGAAACATCTTCTTACTCTTAATGAGGAAATAGGACTTACGTGTCGGTATTGCTCACATGTGTCACTGGAGATCAAGTATTATGACCCTCCATTTAGCAAAAATCCCTCGAGAGAATCAGGCAGGAGAGACTCTAGCACTTTGGACAATGCTGACCACCCTGTCTTTGATGAACTTCAGCAGAAAATCGATTGTGATGACGACTCTTCCGGGCATGATCCTTATATTTCCACGGGAACGGTGTGGGATATAATTCCGGGAGTGAAAAAGAGTATGTTCCCTCATCAACGCGAAGCTTTTGAATTTCTTTGGATAAACTTAGCTGGTGGAATATTTCTTGACAAGTTGAAGGAGCCCTTAGATTTTGCTAGTGGAAGTGGTTGCATTATATCACATGCTCCTGGCACTGGGAAAACCCTTCTTACTATTGTCTTTCTCCAGGCGTTCATGGAGTTGTATCCAAATTGCAGACCAATGATCATAGCTCCAAGCAACATGCTTCTTACATGGGAAGAGGAGTTCGAGAAGTGGAAGGTTAGCATTCCTTTTCACAATTTGAACAAGCCTGATTTCTCTTTGAAGGAGAGTGAGGTAGCCACAAGCCTTCTGAGGCAACCTGGTCGTCATGCCCACAATACAAATTCAATCCGTGTAGTTAAGTTGTATTCCTGGAAAAAGGATAGAAGCATCTTGGGAATTAGCTACACCTTGTTTGAGAAGCTTGCTAGAAAGAGCTCTCATGACAAGGTTATAAAGAAAGCCCTTCTTGAGCTTCCTGGTTTATTAGTTCTTGACGAGGGTCACACCCCTCGCAATGCACAGAGTCTCATATGGAAAGCTTTGTCTGAGATCAAGACAAAGAGACGCATCATACTCTCTGGAACTCCCTTCCAGAACAATTTCGTTGAGCTTTATAATACACTCTGCTTGGCGAAGCCAAAGTTTGCAGAATGGAACTCTTCTGGAGACAGGGTAATAGTTGATGAGAAGCCGGGGTGCAGAAGGAAAGAAATCAGAGGGAAATTGGCATATCTGCTCAATTCGTATGGCAGAGTGGAGAGGGATAGCGAAAGAGATAAGATAGTTCATGAGATCAGAGAGATGATTAAACCATTTGTGCATTTGCATAAGGGTACAGTACTGCAAGAGAGTCTTCCTGGGTTGAGGGAGTTGGTAGTTAGATTAAAGCCAACCGGGCGGCAGAAGAAACTTCTTGAATATATTCATGAGACAAGGAAAAGCCACCATCAGGGCAAAGAGGGATCCTCCAGCCGGTTCAAATTAGAACATTTGGAGTCCTTGACTGCTGTGCATCCTGCACTCTTTTGTGCAGCTAAAGATGAGGAGATATTAGAAAGAGTAGAATTGAATCCTGAGGAAGGTGTCAAAACGAAATTTTTAATGGAACTCATCAGGCTTAGTGAGCTCACAAATGAAAAGGTTTTGATTTTTAGTCAGTATATTGATCCCTTGACCTTTCTGACTAACCTGATCAAATCTCATTTTAGTTGGACTGAGGGAAAGGAGATGTTACTCATCCATGGAAAATTCGATGTGAGCACGCGTCAAGCTTCAATCAAAGCATTCAACGATCCCACTAGCAAAGTAAGGGTATTGCTAGCATCAATTAAGGCCTGTTTTGAAGGGATCAATCTGGTCGGTGCCTCAAGGGTTGTTTTGCTTGACATTTTATGGAATCCTTCCGCGGAAAGGCAGGCGGTAAGTCGCGCTTATCGGCTTGGACAAAAGAAAGTTGTATACACTTACCGTCTTATAACATCAGGGTCAAGGGATGAACAAAAATGTTGTCGTCAGGCAGAGAAGGATCATTTGTCTGAACAGGTGTTCTTCTGTCCCAATGGAATTGGACATCATCAGAATATCACGTCAGCACACCTCGAAGATAAACTTTTGGAAAGGATGATTAATAATGAAAATTTTTCAGATATTTTTGAAAGAATAACCACCAACCAAAAAGTTATACTTTGA 3111 0.4282 MYYGTAVAGRTRSRLTLTGKQDLEEKNERKKRNGGEEFGSDYASEEGCSVYSESDDVLLIEERNIDAVTVDDDDVVVIEDSDVDTIPTDDYGEGDVLFTVERDEESLPGKEVENVERSESIGESFRAKTGSKRKEVYGDENGVQDCRCVAQRTRSHFSSKFRTWKSLGTFSNPLCVDEEEEEVEPQGDQCDLDEDDGEVNHSRRKTKATKEKVGSYEFFNGKCLSKSDEGNISNDESEGLDCKKKAHNEKHGRKKHKVDSKDFDAVKILQESLYGEGEVPLEKFASSSDEEGNPKATETFLPLKFTFGTKVSKPPEKSEYEKELDELWAEMDECLRAGSGQVENDHFYGPCPEDEVSGATCGQEKVSRATLCQQGKHLLTLNEEIGLTCRYCSHVSLEIKYYDPPFSKNPSRESGRRDSSTLDNADHPVFDELQQKIDCDDDSSGHDPYISTGTVWDIIPGVKKSMFPHQREAFEFLWINLAGGIFLDKLKEPLDFASGSGCIISHAPGTGKTLLTIVFLQAFMELYPNCRPMIIAPSNMLLTWEEEFEKWKVSIPFHNLNKPDFSLKESEVATSLLRQPGRHAHNTNSIRVVKLYSWKKDRSILGISYTLFEKLARKSSHDKVIKKALLELPGLLVLDEGHTPRNAQSLIWKALSEIKTKRRIILSGTPFQNNFVELYNTLCLAKPKFAEWNSSGDRVIVDEKPGCRRKEIRGKLAYLLNSYGRVERDSERDKIVHEIREMIKPFVHLHKGTVLQESLPGLRELVVRLKPTGRQKKLLEYIHETRKSHHQGKEGSSSRFKLEHLESLTAVHPALFCAAKDEEILERVELNPEEGVKTKFLMELIRLSELTNEKVLIFSQYIDPLTFLTNLIKSHFSWTEGKEMLLIHGKFDVSTRQASIKAFNDPTSKVRVLLASIKACFEGINLVGASRVVLLDILWNPSAERQAVSRAYRLGQKKVVYTYRLITSGSRDEQKCCRQAEKDHLSEQVFFCPNGIGHHQNITSAHLEDKLLERMINNENFSDIFERITTNQKVIL 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0477 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 690 IPR027417 -
Dere09g0477 1036 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 27 1034 IPR044567 GO:0080188
Dere09g0477 1036 MobiDBLite consensus disorder prediction 1 49 - -
Dere09g0477 1036 MobiDBLite consensus disorder prediction 177 195 - -
Dere09g0477 1036 Pfam SNF2-related domain 497 792 IPR000330 GO:0005524|GO:0140658
Dere09g0477 1036 Gene3D - 449 713 IPR038718 -
Dere09g0477 1036 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 688 IPR014001 -
Dere09g0477 1036 MobiDBLite consensus disorder prediction 227 257 - -
Dere09g0477 1036 CDD SF2_C_SNF 837 966 - -
Dere09g0477 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 990 IPR027417 -
Dere09g0477 1036 MobiDBLite consensus disorder prediction 229 246 - -
Dere09g0477 1036 Gene3D - 760 1034 IPR027417 -
Dere09g0477 1036 Pfam Helicase conserved C-terminal domain 839 955 IPR001650 -
Dere09g0477 1036 MobiDBLite consensus disorder prediction 17 39 - -
Dere09g0477 1036 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 839 1003 IPR001650 -
Dere09g0477 1036 MobiDBLite consensus disorder prediction 177 207 - -
Dere09g0477 1036 MobiDBLite consensus disorder prediction 103 136 - -
Dere09g0477 1036 SMART helicmild6 866 955 IPR001650 -
Dere09g0477 1036 SMART ultradead3 462 701 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0477 Dere-ChrDere09 7591043 7595715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0477 852 990 RAD5 or RAD16-like Gene Family AT5G05130 39.007 2.56e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere09g0477 SNF2_N 1.3e-24 CL0023