Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0458 ATGGCAAACCCATCTTCCTCTGCTCCCTCATCCGATTCCGGGCACTTCACCTACTCCGACGGCTCCTACTTTCCTATGCCTTTCCATCTTCAGCAATCTGCTTCCACGACGTCGTCTCACTATGCTGCGCCATACGTGGCGGCCTCACCGGCGCTGCAAATACCCCCTCAGGCGCCTCCCGCCGCTGCGTCCGGCGTTTACTCTTACCCGCAGTATCAGCAGGCGCAGCAGTTATTTCAACGGGATGCGCAGACAATCACACCAGAGGCTCTCGAGAATGTCAAAGCAGCCATTGCTAACAGCGAGATCGAGCACAAAGCAGAGACCAAAAAGAAAGCGATTCCTCGCAAAGCTGCAGGGCAATCGTGGGAGGATCCTTCGCTGGCTGAGTGGCCGGAGAATGATCATCGGCTGTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCGAAAGCTTTTTCTCGATTTCCTTCATTCAACATGGCAAGAGTTGTGAGGGATAAGCGGAGTGGAAAAACAAAAGGCTATGGATTTGTTAGCTTTGCAGATCCTTCTGACCTTGCTGTTGCTCTTAAAGAGATGAATGGTAAATATGTGGGAAACCGGCCAATCAAACTGTGCAAGAGTAAGTGGAAGGAGAGAACAGATTATGATGCTCTGGAGAAAAACAAGAAACAATCTCGGAAGAAACCGAAACCTTCAAGAATCGGTGTATTACATTACTGA 735 0.4939 MANPSSSAPSSDSGHFTYSDGSYFPMPFHLQQSASTTSSHYAAPYVAASPALQIPPQAPPAAASGVYSYPQYQQAQQLFQRDAQTITPEALENVKAAIANSEIEHKAETKKKAIPRKAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDALEKNKKQSRKKPKPSRIGVLHY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0458 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 224 - -
Dere09g0458 244 MobiDBLite consensus disorder prediction 221 244 - -
Dere09g0458 244 Coils Coil 91 111 - -
Dere09g0458 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Dere09g0458 244 FunFam RNA-binding protein 42 71 221 - -
Dere09g0458 244 SUPERFAMILY RNA-binding domain, RBD 119 216 IPR035979 GO:0003676
Dere09g0458 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Dere09g0458 244 CDD RRM_RBM42 130 212 IPR034215 -
Dere09g0458 244 MobiDBLite consensus disorder prediction 229 244 - -
Dere09g0458 244 MobiDBLite consensus disorder prediction 108 129 - -
Dere09g0458 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Dere09g0458 244 Gene3D - 71 210 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0458 Dere-ChrDere09 7419093 7419827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0458 138 231 Eukaryotic Initiation Factors Gene Family AT1G71770 29.787 2.51e-08 52.4