LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g0435	ATGCAAACCTACAACACAGGAGGTGCGAATTCCGGCGATGCCGTGTCCGGACAGACTACCTACAACTCCGATTTAGCCCTCTTGGACTCCATTCGCCGCCACTTGCTCGGTGAATCCGAGGCTGCTACGATTGATAAATCGGGTAACGCTCCTGCTTACAGCTCCAGTTTCAGCAGATTGTCCACATGCCTGAGTGATCATTGGGGTGAATTGCCTCTCAAAGAGGATGATTCCGAAGACATGCTACTCTACGGTGTACTCCGGGACGCCGTCCACGTCGGATGGGCCCCATCCATCGACGTTGGCTTCCCGGAAAGCGTCTCCTCTGCTTTCCCATCCACCGTTACGGTGAAATCGGAGCCCGATGTTTTTCCGGCGGCGGCGGCCCCGCAAGAGAAGGCGAAGGGGAAGCATTATCGAGGCGTGCGTCAACGGCCGTGGGGGAAGTTCGCGGCTGAGATCCGTGACCCGGCTAAGAATGGGGCTCGGGTGTGGCTCGGAACATTTGAAACGGCTGAGGACGCGGCTCTGGCTTACGACCGAGCCGCTTACAGGATGCGCGGCTCACGGGCTCTGCTTAATTTTCCGCTGCGGGTGAACTCGGGTGAACCCGAGCCTGTGAGAGTGAGAGGGAGGCGGTCTTCGTCGGAGCCTGTGTCGGGTTCGGAGAGTGGGTCGACTCCGAAGCGAAAGAAGGTGGCGAGAGGGCAAGTTGGAAGTGAAGTGGCATCTTGTACACATGGACAACATCTATTGGTCAGCTAA	765	0.5778	MQTYNTGGANSGDAVSGQTTYNSDLALLDSIRRHLLGESEAATIDKSGNAPAYSSSFSRLSTCLSDHWGELPLKEDDSEDMLLYGVLRDAVHVGWAPSIDVGFPESVSSAFPSTVTVKSEPDVFPAAAAPQEKAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVRGRRSSSEPVSGSESGSTPKRKKVARGQVGSEVASCTHGQHLLVS	254

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g0435	254	MobiDBLite	consensus disorder prediction	202	254	-	-
	Dere09g0435	254	Gene3D	AP2/ERF domain	137	199	IPR036955	GO:0003700\|GO:0006355
	Dere09g0435	254	FunFam	Ethylene-responsive transcription factor 2	137	197	-	-
	Dere09g0435	254	PRINTS	Ethylene responsive element binding protein signature	162	178	IPR001471	GO:0003700\|GO:0006355
	Dere09g0435	254	PRINTS	Ethylene responsive element binding protein signature	139	150	IPR001471	GO:0003700\|GO:0006355
	Dere09g0435	254	SMART	rav1_2	138	202	IPR001471	GO:0003700\|GO:0006355
	Dere09g0435	254	ProSiteProfiles	AP2/ERF domain profile.	138	196	IPR001471	GO:0003700\|GO:0006355
	Dere09g0435	254	Pfam	AP2 domain	138	188	IPR001471	GO:0003700\|GO:0006355
	Dere09g0435	254	CDD	AP2	137	196	IPR001471	GO:0003700\|GO:0006355
	Dere09g0435	254	PANTHER	DNA-BINDING DOMAIN	114	224	IPR044808	GO:0003700\|GO:0009873
	Dere09g0435	254	SUPERFAMILY	DNA-binding domain	138	198	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g0435	Dere-ChrDere09	7169705	7170469	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g0435	22	253	AP2-EREBP Transcription Factor Family	AT4G17500	55.639	5.77e-83	247

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere09g0435		AP2	1e-14	CL0081