Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0434 ATGGCGAACCAAGTTGAGGTTTCGGTCCTCGAGCGCATAAAATTGCATCTTCTAGGTGAGCTGTCTCCATTGGGGACCTTCTCGAATGACCCTAGCACATCAGGTGCCGATGATACTCAATACCTTTGGTTAGAGAAGGCGAACCAAGCTATTTCAAGTTCCCAATCTTCGAGTTCTGACTCTTCTTCTCTCACGTCCGATTGCTTTCCTGACCTCTTCGATTTCCCAAACAATCCCATACCTTCAACACAGAATCAGACTAATTTATTTGAATATGAGTCCAAACCCCAAATAATTGACCTCTCCACGCCAAAATCCTTAGTCCCAACTTCACAATTCGACAGCAATTTTCCCATATACGAACCAAATTCACAGGCAAGCTCTCAGTCCAACAGTTGCGTGTTGGAGTTCGACCCAAGACCTCAATCATTGGGGAAGAAGTCTCTTTCGAGTAGGAAGCCATCGTTGCAAATCTCGCTTCCGAAGAAGACCGAGTGGATCCAATTTGGGAATCCGGATCAGCAGGAGGAGGTATCAGAGATGTTGGTGCAGAACAATTCGAAGGGTGGAGAGAAAAAACACTACAGAGGAGTCCGACACAGGCCGTGGGGCAAGTATGCAGCTGAGATCCGAGACCCGAACAAGCGGGGATCCAGATTGTGGTTGGGAACATTCGACACGGCTATCGAAGCCGCCAGAGCCTACGATCAAGCTGCCTTCAAGCTTCGCGGCTCCAAAGCCATCCTAAACTTCCCTTTGGAAATTAGCACATCGAGCTCGGTGGTCAGCTCCGGCGGGGGGAAGCGCCGCCGTCAAGAGGAGGAGGAGGTGGCGGAAGTGGAAGTGAAACCGGAGGTGAAGAAGGCGAAAACGACAGAATCTGAGGTGAACTGTGCAAGGGACGTTCCGTTAACGCCGTCTTGTTGGACTGGGTTCTGGGACAACGATTTAAACGGGATTTTCAGTGTGCCGCCGTTATCACCGTTATCTTCTCACCGTCCTTTTGGTTATCCACAGCTTATGGTTGTATGA 1032 0.4971 MANQVEVSVLERIKLHLLGELSPLGTFSNDPSTSGADDTQYLWLEKANQAISSSQSSSSDSSSLTSDCFPDLFDFPNNPIPSTQNQTNLFEYESKPQIIDLSTPKSLVPTSQFDSNFPIYEPNSQASSQSNSCVLEFDPRPQSLGKKSLSSRKPSLQISLPKKTEWIQFGNPDQQEEVSEMLVQNNSKGGEKKHYRGVRHRPWGKYAAEIRDPNKRGSRLWLGTFDTAIEAARAYDQAAFKLRGSKAILNFPLEISTSSSVVSSGGGKRRRQEEEEVAEVEVKPEVKKAKTTESEVNCARDVPLTPSCWTGFWDNDLNGIFSVPPLSPLSSHRPFGYPQLMVV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0434 343 Pfam AP2 domain 194 244 IPR001471 GO:0003700|GO:0006355
Dere09g0434 343 CDD AP2 193 252 IPR001471 GO:0003700|GO:0006355
Dere09g0434 343 PRINTS Ethylene responsive element binding protein signature 234 254 IPR001471 GO:0003700|GO:0006355
Dere09g0434 343 PRINTS Ethylene responsive element binding protein signature 195 206 IPR001471 GO:0003700|GO:0006355
Dere09g0434 343 Gene3D AP2/ERF domain 193 254 IPR036955 GO:0003700|GO:0006355
Dere09g0434 343 ProSiteProfiles AP2/ERF domain profile. 194 252 IPR001471 GO:0003700|GO:0006355
Dere09g0434 343 SUPERFAMILY DNA-binding domain 194 254 IPR016177 GO:0003677
Dere09g0434 343 SMART rav1_2 194 258 IPR001471 GO:0003700|GO:0006355
Dere09g0434 343 FunFam Ethylene-responsive transcription factor 2 193 254 - -
Dere09g0434 343 PANTHER DNA-BINDING DOMAIN 143 281 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0434 Dere-ChrDere09 7149654 7150685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0434 1 343 AP2-EREBP Transcription Factor Family AT5G47230 44.669 2.16e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g0434 AP2 5.4e-15 CL0081