Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0423 ATGAAAGAATCTGTCCTTTTACACTCTCAAATTCAGCCAACCACTTCCTCCTCCTCCTCTTCCTCTTCCTTCTGCAGAGAACCCAGTGTAGAGAAGAAAACTCAAGAACATGAAGAAGAAGAAGAAGGCTCTGGAAATCATAAGAAAAGAGTGAAGAGAGGCGCTGCTAAACACAGACACACAACCTACCGTGGAGTTCGCATGCGTCAATGGGGCAAATGGGTATCTGAAATCAGAGAGCCCAGGAAGAAATCTAGAATCTGGCTCGGTACTTTCGCTAGCCCTGAGATGGCGGCTCGAGCTCACGACGTGGCGGCTCTTACAATCAAAGGCACCTCCGCTTTCCTCAACTTCCCCGAATTGGCCGAACAGCTTCCACGCCCGGCCACCCACTCCCCTAAGGACATCCAAGCCGCCGCCGCAAAAGCAGCCGCGCTCGGCCATCAACATCAACTGCAACCCGAGTCTAAACGGTCGTCAAATTCGCCATTGACGGACGAGGATGACACGTTCTTCGACCTCCCTGATCTCTTACTCGACTTGAATTATAGTGATGAGGGGTTTCGTTACTCGCCGCCGTGGCCGGTGGCCGGAACTGAATGCCCAGACCCAGCTTTCTGGCCGGACGATCCTCTTCTTCTATGGGAGTCTTGTTAG 657 0.5251 MKESVLLHSQIQPTTSSSSSSSSFCREPSVEKKTQEHEEEEEGSGNHKKRVKRGAAKHRHTTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFASPEMAARAHDVAALTIKGTSAFLNFPELAEQLPRPATHSPKDIQAAAAKAAALGHQHQLQPESKRSSNSPLTDEDDTFFDLPDLLLDLNYSDEGFRYSPPWPVAGTECPDPAFWPDDPLLLWESC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0423 218 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Dere09g0423 218 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Dere09g0423 218 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Dere09g0423 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 177 - -
Dere09g0423 218 Pfam AP2 domain 63 111 IPR001471 GO:0003700|GO:0006355
Dere09g0423 218 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Dere09g0423 218 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Dere09g0423 218 MobiDBLite consensus disorder prediction 1 63 - -
Dere09g0423 218 FunFam Ethylene-responsive transcription factor 2 61 120 - -
Dere09g0423 218 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Dere09g0423 218 MobiDBLite consensus disorder prediction 29 49 - -
Dere09g0423 218 MobiDBLite consensus disorder prediction 1 28 - -
Dere09g0423 218 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Dere09g0423 218 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0423 Dere-ChrDere09 7054707 7055363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0423 40 194 AP2-EREBP Transcription Factor Family AT4G16750 60.510 5.82e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g0423 AP2 5.8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0423 09 7054707 7055363 Dere13g0259 13 3732363 3733028 CCT