Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0421 ATGGCACCCAAGAATGTTAGATCAACTGACATGTTTTTGAGCAGAGGAGCATGGACCCCAGAGGAAGATCAGAAACTAGCTCAAGGCATTGAAATTCATGGGGCAAAGAGGTGCAAGACTATTGCAGTCGAATCAGGTCTAGATAGATGCGGAAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAAAATCAGGAGGGGCAATATATCAGATGACGAAGCGGATTTAATTCTTAGGCTTCACAGACTGCTGGGAAACAGGTGGTCTTTAATTGCTGGGAGGCTTCCTGGACGAACAGATAATGAAATAAAGAATTACTGGAATTCTCATTTGTGCAAGAAGGTTAATCACAAAGGGAAAATGCCAGAGACTTCAAAAGCATTAGAAACTACGCCCTACAATACTTTGGAGAATTCTCTAGCAGAACATGATAATGCCGAAGGGAGCGCAAACTCTGATATCAGCTTTGATGTGAATGAGTTCTTTGACTTCCCAACTGAAGGACCCTATGGGTTAGAACTTCCATTGGGTGAAGAAGTACCTAGAACTTGA 558 0.4283 MAPKNVRSTDMFLSRGAWTPEEDQKLAQGIEIHGAKRCKTIAVESGLDRCGKSCRLRWLNYLRPKIRRGNISDDEADLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNHKGKMPETSKALETTPYNTLENSLAEHDNAEGSANSDISFDVNEFFDFPTEGPYGLELPLGEEVPRT 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0421 185 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere09g0421 185 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dere09g0421 185 Gene3D - 13 68 - -
Dere09g0421 185 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Dere09g0421 185 Gene3D - 71 140 - -
Dere09g0421 185 CDD SANT 72 113 IPR001005 -
Dere09g0421 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere09g0421 185 FunFam MYB-related transcription factor 14 67 - -
Dere09g0421 185 FunFam transcription repressor MYB5-like 72 139 - -
Dere09g0421 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dere09g0421 185 SMART sant 67 115 IPR001005 -
Dere09g0421 185 SMART sant 14 64 IPR001005 -
Dere09g0421 185 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dere09g0421 185 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Dere09g0421 185 CDD SANT 17 62 IPR001005 -
Dere09g0421 185 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 11 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0421 Dere-ChrDere09 7018388 7019150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0421 9 132 MYB Transcription Factor Family AT3G13540 62.097 1.04e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere09g0421 Myb_DNA-binding 2.1e-14 CL0123