Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0398 ATGGAGAGCCACCAATGCAAGCTTTGCTCCAGGACCTTCGCTAATGGCAGAGCATTGGGTGGTCACATGAAGGCTCACTTGGCCTCTCTTCCTCTCCCTCCAAAGCCCCAACCTCTCTCTCCCTCAGCATCTTCCTTCTCCTATTCCTCTTCCCACGAAGAAGAACCCGAACCAGAAGTAGCGCTTGCATACAGAGATTCAGAGGAAAAAGCTTTGAGTTATGGGTTGAGAGAGAATCCCAGGAAAAGCTTCCGGTTTGCAGATCCTGAGTTTTCTTTTGTGCTTGACACTGGGTCCGTCGTCCAGGATAGAGAAAGCGAGACCGAGTCAAAGAATCTAACTCGCCGACGATCCAAGCGAACTCGAAAACCCAGCGTCGCAGCAAGCCAGAGCCAGAAATTTGAAGTAAAAGAGGCTAAGCAAAGTTTCACGGAGTCGCCGACCGAGCCAGAACCGGGGAGCTCGGTTTCTGGTACTTCCCCTGATGAGGATGTCGCCATGTGCCTCATGATGCTCTCGAGGGACCGATGGATGAGAAATGGTGTGGAACGAGATCAAGTGGAAAGATCGAAGGGATTGAAAGAGATCAAGTTGAAGAGGAAGCATCAGTCTGACAACATTAAGAAAACGTCGCGATCTTCACGAGCATTGGCCACTCGCAATAGCACCTGCTTTCCTGATGAAGCAGAAGCCAAAATTGGAGGTAATGATAAAATTTTCAAATGCCCATTTTGTTACAAGGTATTTGGGTCAGGACAGGCACTTGGTGGCCACAAGAGATCTCACCTCCTACCATCTTCCTCGTCAACTGTTATCCACTCTGCTAAATGTTCCATAGATCTCAACTTGCCAGCTCCCGCAGAAGAAGATGAACTCAGTGTGGTTTCTGATGCGTAA 897 0.4905 MESHQCKLCSRTFANGRALGGHMKAHLASLPLPPKPQPLSPSASSFSYSSSHEEEPEPEVALAYRDSEEKALSYGLRENPRKSFRFADPEFSFVLDTGSVVQDRESETESKNLTRRRSKRTRKPSVAASQSQKFEVKEAKQSFTESPTEPEPGSSVSGTSPDEDVAMCLMMLSRDRWMRNGVERDQVERSKGLKEIKLKRKHQSDNIKKTSRSSRALATRNSTCFPDEAEAKIGGNDKIFKCPFCYKVFGSGQALGGHKRSHLLPSSSSTVIHSAKCSIDLNLPAPAEEDELSVVSDA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0398 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Dere09g0398 298 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Dere09g0398 298 SUPERFAMILY beta-beta-alpha zinc fingers 3 262 IPR036236 -
Dere09g0398 298 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Dere09g0398 298 MobiDBLite consensus disorder prediction 27 61 - -
Dere09g0398 298 Pfam C2H2-type zinc finger 240 262 - -
Dere09g0398 298 Pfam C2H2-type zinc finger 4 28 - -
Dere09g0398 298 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 298 IPR044303 GO:0006355
Dere09g0398 298 MobiDBLite consensus disorder prediction 100 163 - -
Dere09g0398 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 262 IPR013087 -
Dere09g0398 298 SMART c2h2final6 240 262 IPR013087 -
Dere09g0398 298 SMART c2h2final6 4 26 IPR013087 -
Dere09g0398 298 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0398 Dere-ChrDere09 6766574 6767470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0398 1 295 C2H2 Transcription Factor Family AT3G60580 34.954 7.42e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere09g0398 zf-C2H2_6 1.4e-06 CL0361