Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0362 ATGTCATCATCCTCTTCCACTGCCTTATCGCTGGACCACCTCCCTCCTTCCGAGCAGCTTTGTTATGTCCACTGCAACATTTGTGACACAGTCCTCGCTGTAAGTGTTCCTTGCACTAGCTTGTTCAAGACCGTGACTGTGCGATGCGGCCATTGCACCAACCTCTTACCAGTGAACATTCGTGGATTGCTTCTGCCTTCAGCAAACCAGTTTCATTTGGGCCACTCTTTCTACTCTCCGTCTCATAATCTTCTGGAGGAGATACCAAACCCGTCCCCAAATTTTTTGATCAATCAGACCAACCCATCCAGTGACTTCTCTGTGCCTTCTAGGACTTCAGCTGATGAGCTACCACGCCCTCCCATCATCAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCCTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGAGAAGCTTTCAGCGCAGCTGCCAAGAACTGGGCCCACTTCCCCCACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGTCAGCAGGAAGGAGAGGACGTTCACATGAAAGATGGGTATTTTGCGTCGGCAAATGTTGGTGTTTCTCCCTACTAG 645 0.4977 MSSSSSTALSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNIRGLLLPSANQFHLGHSFYSPSHNLLEEIPNPSPNFLINQTNPSSDFSVPSRTSADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEDVHMKDGYFASANVGVSPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0362 214 Gene3D High mobility group box domain 123 187 IPR036910 -
Dere09g0362 214 PANTHER PROTEIN YABBY 6-RELATED 1 188 IPR006780 GO:0007275
Dere09g0362 214 MobiDBLite consensus disorder prediction 93 129 - -
Dere09g0362 214 SUPERFAMILY HMG-box 122 171 IPR036910 -
Dere09g0362 214 CDD HMG-box_SF 132 168 - -
Dere09g0362 214 MobiDBLite consensus disorder prediction 93 111 - -
Dere09g0362 214 FunFam Axial regulator YABBY 123 194 - -
Dere09g0362 214 Pfam YABBY protein 16 178 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0362 Dere-ChrDere09 6406389 6408611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0362 27 212 C2C2-YABBY Transcription Factor Family AT4G00180 57.416 5.33e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dere09g0362 YABBY 3.8e-70 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0362 09 6406389 6408611 Dere09g0362 09 6406389 6408611 ECH