Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0356 ATGGGGAGGCAACCTTGCTGTGACAAGCTAGGCGTGAAGAAAGGACCATGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGAGCTGTTCCCAAGCTCGCCGGCCTCCGACGTTGCGGCAAGAGTTGCCGCCTTCGTTGGACTAATTATCTTCGCCCCGATTTGAAGAGAGGCCTTCTCACTGAAGCTGAAGAGCAGCTCGTTATCGACCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGATTACCGGGAAGGACAGACAATGAGATTAAGAATCACTGGAACACCCACATCAAGAAAAAGCTACTTAAGATGGGGATTGATCCTGTTACTCATGAACCTCTTAATAAACAAGCTGCCTCCGAAGAAACTTCGTCCCCTGCACAGAATATGCCACAATCTGCCAATAAGGAAACCGATGGGGTTCCCAACTCAGAGGAGAATTCAAGCTCATCCCCTGCTGAAAACTCTTCTGGGGACGAATCCCTTCTGCTAGACAGCATTTGCAGCGATGACTCTCTAATGAACAGCTTGTGGCTGGACGAAACACCACTGGTGGATGCATTATGGGACTGTGCCCCTAAAGTAGAGAATACCAATAATGACATGGGTATGCCATCATGGGAAGACAACTGTGCTTGGTTTTTGGACTGTCAAGACTTTGGTATTCATGATTTTGGATTTAATTGTTTTAACGAGATCGAGTCAAATGCATTGCAAACTTTAGGAATGGAGGAAAAGGGGCATTAG 792 0.4785 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASEETSSPAQNMPQSANKETDGVPNSEENSSSSPAENSSGDESLLLDSICSDDSLMNSLWLDETPLVDALWDCAPKVENTNNDMGMPSWEDNCAWFLDCQDFGIHDFGFNCFNEIESNALQTLGMEEKGH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0356 263 MobiDBLite consensus disorder prediction 130 176 - -
Dere09g0356 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere09g0356 263 CDD SANT 16 61 IPR001005 -
Dere09g0356 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 177 - -
Dere09g0356 263 Gene3D - 71 154 - -
Dere09g0356 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere09g0356 263 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere09g0356 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere09g0356 263 FunFam MYB transcription factor 11 67 - -
Dere09g0356 263 MobiDBLite consensus disorder prediction 131 176 - -
Dere09g0356 263 CDD SANT 71 112 IPR001005 -
Dere09g0356 263 Gene3D - 12 67 - -
Dere09g0356 263 SMART sant 13 63 IPR001005 -
Dere09g0356 263 SMART sant 66 114 IPR001005 -
Dere09g0356 263 FunFam MYB transcription factor 70 147 - -
Dere09g0356 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere09g0356 263 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dere09g0356 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0356 Dere-ChrDere09 6292060 6293592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0356 1 255 MYB Transcription Factor Family AT4G12350 60.993 2.07e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere09g0356 Myb_DNA-binding 2.7e-13 CL0123