Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0343 ATGGGTTGGTTTTCTTCGTTATACGGATGTTGTGTAAAACTTAATGCTTGGGATGTCTATATATCTAGATTTTTGGGTCAAAATAAACAATTTGGCTTCATCTGTGACTATGTAATTTTGGCGCAAACTACATGCCCTCTTGCTGGAGATGGAACGCAGAGGAAGAAGCTAGTATGGGTAAAAGATGGAACATGGAACTTCAGCACCATTACTGAAGCTGTAAACTTTGCCCCTAATAATAACTTGGACGGGACATTAATCTATGTGAAGGTTGAGGTTTACAAGGGAAATGTGGATATCCCAAGTCACATGACTAACATTGTTATGCTTGGAGATGGAAGCAACGACACTATCATTACCAGTAATAGAAGCGTGGGTGATGGGTAG 387 0.4005 MGWFSSLYGCCVKLNAWDVYISRFLGQNKQFGFICDYVILAQTTCPLAGDGTQRKKLVWVKDGTWNFSTITEAVNFAPNNNLDGTLIYVKVEVYKGNVDIPSHMTNIVMLGDGSNDTIITSNRSVGDG 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0343 128 SUPERFAMILY Pectin lyase-like 61 127 IPR011050 -
Dere09g0343 128 Gene3D - 51 128 IPR012334 -
Dere09g0343 128 PANTHER PECTINESTERASE 55 125 - -
Dere09g0343 128 Pfam Pectinesterase 58 127 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0343 Dere-ChrDere09 6197004 6199292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0343 55 128 Carbohydrate Esterase AT2G26440 62.162 2.32e-22 89.4