Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0328 ATGGAGGCAAGGGATGGAGTTAGCAGTGCGGTTACGGTGGTGGGATCAGATGCTCCGTCGGACTATCACGTAGCTCCCAGGACTGAAAACCCAGCATCCACTGGCGGATTAACAACGCCGGCGCCGGCGCCGGCTCCAGCGGCTCCAGGGAGTGTTCCTCCACCGCAGACAACAGTGGTGGGAGCGGCGCCGGGAGCCTCGACGATGCCGATGAAGAAGAAAAGGGGTAGACCAAGAAAGTATGGGCCAGACGGGTCGGTGACCATGGCGCTATCTCCCAAGCCAATATCTTCTTCGGCTCCCGCCCATGTCATCGATTTCTCCGCAGATAAGCGCGGGAAAGTGCGTCCAGCCAGTTCGGTCAGCAAAGCCAAATTTGAGGTCGAGAATTTAGGTGAATGGGTTGCATGCTCCGTGGGTGCTAATTTTACACCCCATATAATCACAGTTAACTCTGGGGAGGACGTTACTATGAAGATAATATCATTTTCTCAGCAAGGACCTCGAGCTATATGTATTCTTTCTGCAAATGGCGTCATATCAAGTGTCACTCTTCGTCAGCCTGATTCTTCCGGGGGCACATTAACATATGAGGGACGATTTGAAATTCTTTCATTGTCTGGGTCATTCATGCCAAGTGAAAGTGGGGGAACACGGAGCAGGTCTGGAGGCATGAGCGTTTCTCTGGCAAGCCCAGATGGTCGTGTTGTAGGTGGTGGAGTGGCGGGTCTATTGGTAGCTGCAAGTCCAGTGCAGGTAGTGGTAGGCAGTTTTCTGGCAGGAAACCAACACGAGCAAAAGCCCAAGAAACATAAACCTGAGGTGATATCCACTGCCACACCAACTGCTGCTGTTCCCATGTCTAGTGTTGCTGATCCAGTCCCCCTCCTCACGTCCTCATCTTCCTTTAGAGGAGACAGTTGGTCTGCAATCCCAGCAGATAACAGGAATAATAATAATAAGCCAACTGATATTAATGTGTCACTGTCTGGAGGGTAA 999 0.5175 MEARDGVSSAVTVVGSDAPSDYHVAPRTENPASTGGLTTPAPAPAPAAPGSVPPPQTTVVGAAPGASTMPMKKKRGRPRKYGPDGSVTMALSPKPISSSAPAHVIDFSADKRGKVRPASSVSKAKFEVENLGEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKHKPEVISTATPTAAVPMSSVADPVPLLTSSSSFRGDSWSAIPADNRNNNNKPTDINVSLSGG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0328 332 ProSiteProfiles PPC domain profile profile. 140 279 IPR005175 -
Dere09g0328 332 FunFam AT-hook motif nuclear-localized protein 1-like 145 275 - -
Dere09g0328 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Dere09g0328 332 CDD DUF296 144 235 IPR005175 -
Dere09g0328 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 302 IPR039605 GO:0003680
Dere09g0328 332 MobiDBLite consensus disorder prediction 1 98 - -
Dere09g0328 332 MobiDBLite consensus disorder prediction 302 332 - -
Dere09g0328 332 Gene3D - 145 276 - -
Dere09g0328 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0328 Dere-ChrDere09 6068804 6072629 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0328 6 330 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 63.295 3.18e-130 374