Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0324 ATGGATCCAATGACAGGACATGGGCATTCTCTTCCTGCACCTTTCCATCTACACCAGCATGAGCATCAATTTCAGGCTCTACAGCAAAACACAGAGGAGGAGCAAAGCGGGAGCAGCAGCGGCCTAAACCTTGGGCACAAGAGAGAACGCGAAGAAAGCAGCCACAACAACGATCAAGGGAATATCAATGGGGAAGGTGCAGAAATCACAAGAAGGCCGCGAGGAAGACCCGCGGGATCCAAGAACAAACCCAAACCCCCCATCATCATAACCCGAGACAGCGCAAATGCCCTCAGAACCCACGTGATGGAGGTGGGGGACGGCTGTGACATAGTGGAGAGCGTGTCCAACTTCGCCAGGCGACGCCAGAGAGGGGTTTGCATTATGAGCGGAACCGGCACCGTCACCAATGTCACTCTCAGGCAACCTGCTTCTTCCGGTGCTGTCGTCACACTTCACGGAAGGTTCGAGATCTTGTCACTCTCTGGCTCCTTCTTGCCGCCACCGGCTCCACCGGCTGCATCTGGTTTGACCATATATTTGGCTGGCGGGCAAGGTCAGGTGGTCGGGGGAACTGTGGTAGGCACGCTAATGGCTTCCGGGCCGGTGGTGATCATGGCAGCGTCGTTTAGTAACGCCGCGTATGAGAGGCTTCCTTTGGAAGACGAGGACCCTTCCATGGCACTGCAAGGGCCCGGAATAGGATCGCCAAGTGGAGTTGGTCAGCAGCAGCAGCAACAGCAACAACAGCTATTAGGGGATGCAACAGCTCCACTCCTGCATGCTTTGCCTCCTAATCTTATGAATTCTATGCAGATGCCATCCGAGCCTTTCTGGGCTTCTGCTCGCCCTCCCTTTGGATGA 864 0.5544 MDPMTGHGHSLPAPFHLHQHEHQFQALQQNTEEEQSGSSSGLNLGHKREREESSHNNDQGNINGEGAEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEVGDGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGTVVGTLMASGPVVIMAASFSNAAYERLPLEDEDPSMALQGPGIGSPSGVGQQQQQQQQQLLGDATAPLLHALPPNLMNSMQMPSEPFWASARPPFG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0324 287 PIRSF ESCAROLA 13 286 IPR014476 GO:0003680
Dere09g0324 287 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Dere09g0324 287 CDD DUF296 99 166 IPR005175 -
Dere09g0324 287 MobiDBLite consensus disorder prediction 236 251 - -
Dere09g0324 287 MobiDBLite consensus disorder prediction 1 90 - -
Dere09g0324 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 280 IPR014476 GO:0003680
Dere09g0324 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 224 - -
Dere09g0324 287 Gene3D - 98 227 - -
Dere09g0324 287 MobiDBLite consensus disorder prediction 223 251 - -
Dere09g0324 287 MobiDBLite consensus disorder prediction 22 43 - -
Dere09g0324 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Dere09g0324 287 FunFam AT-hook motif nuclear-localized protein 98 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0324 Dere-ChrDere09 6035152 6036015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0324 1 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.142 6.35e-83 251