Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0299 ATGAAAGCTGATAGCACTGACTTATCGTGCCCCCACTCGGAGAAAAAGTTTCTTTACGGGAATGGCTTCATAATGGATTCACGTGTCTGGGAGCATTTATTCTCTTTTTTTCTTAATATGGGAAGGGTCAAATTTATTTTCCGGTGGTTGCCAAAAGAAGAAAAGAGATCAGGTTCTGGGTCTTGGCTTTTTTCCGGTCATCAATCAGATTTATGGTCTCGGAATCGTACATTGGTTAGTCCCGGGGGATCTATTAGGATGGTGAGGGGGAAAACTCAGATGAAACGCATAGAAAATGACACAAGCAGGCAAGTTACCTTCTCAAAGCGAAGAAACGGGCTGCTCAAGAAGGCCTTCGAGCTGTCCGTGCTGTGCGATGCTGAAGTTGCACTCATAATCTTCTCCCCCAGAGGGAAGCTTTCTGAGTTCTCCAGTTCAAGGTATGTTATTAGTACTACCCCAAAACGAGAACCCAATATCAGCAAAACCAAGACTACTTATTTTGCCTGTTTATATCTATTTGGTTCCGTTACGAAGAATCTTATTCATTATGTTAAATCGCTGGGACAAATCATACCAGCTTTCTTTGATCTTTATCATCACGGCAATTCTTCTGTACTGCTTCATGATAATCCAGCAACTTTTGGAGTTGTCTTCCTCGACCGCTTGTTTTCCTCTCAGAATTTGATGCATCTGAAGGAAGGTTCCAGATGCATGACAAAGAAGATCGAGCATCTTGAAATTTCTAAAAGGAAGCTTTTGGGAGATGGTTTGGATACATGTTCCATTGACGAGTTACGTCAGATAGAGAACCAACTGGAGCAAAGTTTAGCCAAAATTAGGGCAAGAAAGAGCCAATTGTTCGAGGAGCAGATCCAGAAGCTAAGGGTAGAGGAAAAGCGTCTCCTGGAAGAAAATGAAAACTTACGGAAACAGTGTGGCGATGGGCAACAATGGCATTCAACTAGAGAGCAGGATGTTGCACACTTGGAAGAAAGGGGGGATGAAGTGGAGACGGAGTTGGTTATAGGACCACCTGAGAGACGAATGCCTTGA 1056 0.4328 MKADSTDLSCPHSEKKFLYGNGFIMDSRVWEHLFSFFLNMGRVKFIFRWLPKEEKRSGSGSWLFSGHQSDLWSRNRTLVSPGGSIRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLSEFSSSRYVISTTPKREPNISKTKTTYFACLYLFGSVTKNLIHYVKSLGQIIPAFFDLYHHGNSSVLLHDNPATFGVVFLDRLFSSQNLMHLKEGSRCMTKKIEHLEISKRKLLGDGLDTCSIDELRQIENQLEQSLAKIRARKSQLFEEQIQKLRVEEKRLLEENENLRKQCGDGQQWHSTREQDVAHLEERGDEVETELVIGPPERRMP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0299 351 Pfam K-box region 232 313 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g0299 351 PRINTS MADS domain signature 89 109 IPR002100 GO:0003677|GO:0046983
Dere09g0299 351 PRINTS MADS domain signature 124 145 IPR002100 GO:0003677|GO:0046983
Dere09g0299 351 PRINTS MADS domain signature 109 124 IPR002100 GO:0003677|GO:0046983
Dere09g0299 351 ProSiteProfiles K-box domain profile. 229 319 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g0299 351 SMART madsneu2 87 146 IPR002100 GO:0003677|GO:0046983
Dere09g0299 351 MobiDBLite consensus disorder prediction 322 337 - -
Dere09g0299 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 89 307 - -
Dere09g0299 351 SUPERFAMILY SRF-like 89 156 IPR036879 GO:0003677|GO:0046983
Dere09g0299 351 ProSitePatterns MADS-box domain signature. 89 143 IPR002100 GO:0003677|GO:0046983
Dere09g0299 351 MobiDBLite consensus disorder prediction 313 337 - -
Dere09g0299 351 Coils Coil 263 312 - -
Dere09g0299 351 CDD MADS_MEF2_like 89 146 IPR033896 GO:0000977|GO:0045944
Dere09g0299 351 ProSiteProfiles MADS-box domain profile. 87 147 IPR002100 GO:0003677|GO:0046983
Dere09g0299 351 Gene3D - 99 165 IPR036879 GO:0003677|GO:0046983
Dere09g0299 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 96 143 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0299 Dere-ChrDere09 5793687 5800656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0299 87 349 MADS-box Gene Family AT4G22950 45.693 2.58e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere09g0299 K-box 6.5e-23 No_clan