Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0297 ATGATAGGGGACCACTTTGTGTACAGTGCAGGGTTACAAATACAATCCACAATCCACAAATCACAGAAGAAGACGACAGGGCTACAGCTGTGCTGTGATGGTGACCCAGCTGTTACTTCCGTCGACGACCACCACCACCATTATGCTGCGTTGCTTCTCGGGGACTACGTTCTTTCTATCTCATGCTTTTCTCTAGCTATTCGGATCCTGCTTTCACCCATGACCCATACCAACTAGGTTAACTGGAAAACGAAAATGGTGGAAAAAGAACGGTCACGTGGGATAACAACCTCGGACCTACCACCTCATCTGGTTCACAAGATTTCTGGTTTGTTGTTGTTGTTGTTGTGCGCCGAAATGCAATCAGAACCAAGCTTGGGAATGATGGGTGGTGGTTTAGGCGGAGACGTAGCAGCCGGTGACCACCACCGACAACTCAAGGCAGAGATTGCCACACACCCTCTCTATGACCAGCTTATCGCTGCCCATGTCGCTTGCCTACGTGTCGCCACTCCCATCGATCAGCTCCCACTCATCGACGCTCAGTTATCGCAGTCCCATCATATTCTTCGCTCATACGCCTCCCAGCAAACCCATACCCTTTCACCTCACGAGCGTCAAGACCTCGACAATTTCCTGGCACAGTATTTGCTAGTGCTGTGTACCTTCAAAGAACAGCTTCAGCAGCATGTCAAAGTCCATGCCGTCGAAGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTACAAGCTCTCACTGGTGTAAGTTTGGGTGAAGGGAGTGGTGCAACAATGTCAGATGATGAAGATGACTTGCAAATGGATTTCTGTTTAGATCAATCTGGAGCTGAAGGTCACGACATAATGGGATTTGGACCACTGCTTCCTACGGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAAAGAAGAGCAGGGAAATTACCAGGTGACACAACTTCGGTGTTGAAGAACTGGTGGCAGCAACACTCAAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGCTGCAGCTTAAGCAGATCAACAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCAGTCACCTCTTTGAAGTCGAAGCGTAAGAGATAG 1224 0.4788 MIGDHFVYSAGLQIQSTIHKSQKKTTGLQLCCDGDPAVTSVDDHHHHYAALLLGDYVLSISCFSLAIRILLSPMTHTNXVNWKTKMVEKERSRGITTSDLPPHLVHKISGLLLLLLCAEMQSEPSLGMMGGGLGGDVAAGDHHRQLKAEIATHPLYDQLIAAHVACLRVATPIDQLPLIDAQLSQSHHILRSYASQQTHTLSPHERQDLDNFLAQYLLVLCTFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLQMDFCLDQSGAEGHDIMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0297 407 SMART HOX_1 332 397 IPR001356 GO:0003677
Dere09g0297 407 Pfam KNOX1 domain 146 187 IPR005540 GO:0003677|GO:0005634
Dere09g0297 407 SMART KNOX1_2 144 188 IPR005540 GO:0003677|GO:0005634
Dere09g0297 407 ProSiteProfiles 'Homeobox' domain profile. 330 393 IPR001356 GO:0003677
Dere09g0297 407 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 144 394 - -
Dere09g0297 407 SUPERFAMILY Homeodomain-like 332 397 IPR009057 -
Dere09g0297 407 SMART KNOX2_2 199 254 IPR005541 GO:0003677|GO:0005634
Dere09g0297 407 Gene3D - 329 403 - -
Dere09g0297 407 ProSiteProfiles ELK domain profile. 310 330 IPR005539 GO:0003677
Dere09g0297 407 Pfam Homeobox KN domain 350 389 IPR008422 GO:0003677|GO:0006355
Dere09g0297 407 CDD homeodomain 333 394 IPR001356 GO:0003677
Dere09g0297 407 Pfam KNOX2 domain 202 253 IPR005541 GO:0003677|GO:0005634
Dere09g0297 407 FunFam homeobox protein knotted-1-like 3 isoform X1 331 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0297 Dere-ChrDere09 5776138 5782293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0297 123 406 Homeobox Transcription Factor Family AT1G62990 78.966 1.66e-170 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere09g0297 KNOX2 1.1e-16 No_clan