Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0288 ATGGCAGTAGCTTTTTCCGTCAACCTGATAGTTTTTCACTTGACGACAACCTTAAAGCCGAAACTCCACCAATTATACGATGAAGCAGCCAAAGCAAGTACTAACCGTGGGCTCACCCTGCCACGTGCCCTTTCTTCTTCTCCTCCACCTCACCCCTTGGGGCTAAGCTATATATACTCCAACCTTACCCCACTGGACTCTTCACTGTTAAGTCTTCGCATATTTGCAAGCTTTCACATGGACGCTTTTGCGCATAACTCAGAGGGATCCAATTCTTCATCTCACTCCGACGAAGAAGCGATCTTGTTAGCATCGGAAAGACCAAAGAAGCGAGCCGGGCGTAGAATCTTTAAGGAGACCAGGCATCCTGTATACCGAGGAGTGCGACGAAGGAACAAGGACAAGTGGGTATGCGAGGTGCGTGTGCCTAATGACAACAAATCAAGGATTTGGCTTGGAACCTATTCCACTCCTGAGAAGGCAGCCAGGGCACACGACGTTGCAGCACTCGCACTTCGGGGTAAGTCAGCTTGTCTGAATTTCGCCGACTCGGCGCGGCGGCTGCCATTGCCGGAGTCTAACGATCCCGACGAGATACGGAGAGTGGCGGCGGAGGCGGCGGAGGCATTCGAGGGTGACAACCAGCACGATGAAGCTTGCAGCAGTAGTATTGGAATTATGGGAATGGGGGAAGCTAAGGGAGAGGCTATGGCTATGGAAGTAGAGACGGAAGGGAGGTATGTGAATGAAGTTGCAGGCAGAGTTTCAGAGTTTGATGATCAGCTGCCGTATAGCATGGTGGATGAGCCATTGAGATCTCCAACTTACCCTCTTGGAACACATGGGTGGGACTGGAACGACGAGGAGGAGGTCGATCCTGAGGTGTCACTTTGGAGCTTTGCCGCTTGA 909 0.5182 MAVAFSVNLIVFHLTTTLKPKLHQLYDEAAKASTNRGLTLPRALSSSPPPHPLGLSYIYSNLTPLDSSLLSLRIFASFHMDAFAHNSEGSNSSSHSDEEAILLASERPKKRAGRRIFKETRHPVYRGVRRRNKDKWVCEVRVPNDNKSRIWLGTYSTPEKAARAHDVAALALRGKSACLNFADSARRLPLPESNDPDEIRRVAAEAAEAFEGDNQHDEACSSSIGIMGMGEAKGEAMAMEVETEGRYVNEVAGRVSEFDDQLPYSMVDEPLRSPTYPLGTHGWDWNDEEEVDPEVSLWSFAA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0288 302 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Dere09g0288 302 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 87 299 IPR045277 GO:0003700
Dere09g0288 302 SUPERFAMILY DNA-binding domain 124 184 IPR016177 GO:0003677
Dere09g0288 302 SMART rav1_2 124 188 IPR001471 GO:0003700|GO:0006355
Dere09g0288 302 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Dere09g0288 302 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Dere09g0288 302 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Dere09g0288 302 FunFam Ethylene-responsive transcription factor 2 123 183 - -
Dere09g0288 302 Pfam AP2 domain 123 174 IPR001471 GO:0003700|GO:0006355
Dere09g0288 302 ProSiteProfiles AP2/ERF domain profile. 124 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0288 Dere-ChrDere09 5655362 5656334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0288 101 210 AP2-EREBP Transcription Factor Family AT1G12610 80.000 3.74e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g0288 AP2 5.9e-14 CL0081