Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0287 ATGGCCTCGTCGTCGTCTTCCAGGAGCAGGAGGCACCCGCTGTACCATGGCATCCGGTGCCGCGGAGGAAAATGGGTCTCTGAAATCAGGGAGCCCCGTAAGGAATCCCGCATATGGCTCGGCACTTTCCCCACGCCGGAGATGGCCGCCGCTGCCTATGACGTGGCGGCTCTCGCCCTCAAAGGCGGCGATGCCGTCCTCAACTTCCCGGACTGGGTTGGGACTTATCCCGTGCCTGCGTCCTCGTCTGCTGCGGACATTCGCAGTGCTGCTACTGCTGCAGCCGCACTCATGCGGCCTCACCCTCAAACTCAAACTCAAGCCACTCACGATACGGACTATGCGTCGGCTTCGGTGAATGTCGCAGGTAATGCTAATTATTATGAGAATGGGAGCAATGTTTCGTGGACAGAAACAGAATTTGTGGACGAGGAGGCCATATTCGACATGCCAAGCTTGCTGGTGGACATGGCGGGGGGAATGCTGCTTTCCCCTCCAAGAATCAACCCACCATCCTCCGCTAACTCTCCTGATGATAAATCATGTGGAGAAACCTTGTGGAGCTATTTTTGA 573 0.5654 MASSSSSRSRRHPLYHGIRCRGGKWVSEIREPRKESRIWLGTFPTPEMAAAAYDVAALALKGGDAVLNFPDWVGTYPVPASSSAADIRSAATAAAALMRPHPQTQTQATHDTDYASASVNVAGNANYYENGSNVSWTETEFVDEEAIFDMPSLLVDMAGGMLLSPPRINPPSSANSPDDKSCGETLWSYF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0287 190 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 189 IPR045277 GO:0003700
Dere09g0287 190 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Dere09g0287 190 ProSiteProfiles AP2/ERF domain profile. 1 70 IPR001471 GO:0003700|GO:0006355
Dere09g0287 190 Pfam AP2 domain 15 62 IPR001471 GO:0003700|GO:0006355
Dere09g0287 190 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Dere09g0287 190 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Dere09g0287 190 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0287 Dere-ChrDere09 5649891 5650463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0287 4 189 AP2-EREBP Transcription Factor Family AT5G52020 51.596 6.48e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g0287 AP2 2e-09 CL0081