Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0277 ATGGCAACGACTAGGTCACCGAACCGTTCCTCCGACGACATAGTCGATACGACGCCGTTGATAGCAAATTCAGGTGGGTCTTCTGATGAATTCAATTCTGGCCGTCGATTTCTTCGCAGGCAGAGCCTACGCCAAGCGGCTCGGTTCCTGAGGCAGGCAAGTGGCCGTAGGATCATGCGCGAGCCATCGATGCGGGTCAGAGAGACTGCCGCCGAGCAATTGGAAGAGAGACAGGGCGATTGGGCTTATTCCAAACCCGTAGTGATTCTTGATATTATTTGGAACTTCGTCTTTGTTGTCGTGGCCGCTACAGTTTTGGTATTGAGCCGAAGTGAATCGCCGAGCATGCCTTTGAGGTTATGGATTGCGGGCTATGCTCTGCAATGCATCCTTCACGTGGTCTGTGTTTGCGTTGAATATAAGAGACGGAGGCAGTTCCGGCACCGCCAATTTTCGCCATCCTTGAACGCAGTGCAAGGAAGGAGTGGCAGCAGTGGGAATCTGAGTTCAGGTTCAAGGGAGAGTTATGGGGAGTATGGGGCATCGGCACAATTCGACGGAGAGGGTACAAGTGTAGCAAAGCATTTGGAATCAGCAAATACAATGTTTTCATTTATCTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAAGCTTTAGCCCATGATTCTCCTCAGCTATACTGGCTATGTATAACTTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCATGCATAATAGGAATTGCTGTATGTTGCTGTCTTCCATGTATCATTGCACTTCTATATGCAGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAGCAGTTGTCAAAGTTCAAATTCCGAAGAATTGACGACAATGAGAAACCTGCTAGTATTGCACAAGGACCTGCTGGTGGAATAATGACTGAATGTGGCACTGATTCACCCATTGAACACATTATTTCTGAGGAGGATGCGGATTGTTGCATCTGTCTTTCTGCTTATGATGATGGTGTTGACCTTAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCTTGTGTGGACAGGTGGCTGTATATTAATGCCACTTGTCCCCTTTGCAAGTATAACATCTTGAAAAGTATCAACCAGAGTCAAGAGGATGCGTAG 1164 0.4708 MATTRSPNRSSDDIVDTTPLIANSGGSSDEFNSGRRFLRRQSLRQAARFLRQASGRRIMREPSMRVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVVAATVLVLSRSESPSMPLRLWIAGYALQCILHVVCVCVEYKRRRQFRHRQFSPSLNAVQGRSGSSGNLSSGSRESYGEYGASAQFDGEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAHDSPQLYWLCITFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIDDNEKPASIAQGPAGGIMTECGTDSPIEHIISEEDADCCICLSAYDDGVDLRELPCGHHFHCACVDRWLYINATCPLCKYNILKSINQSQEDA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0277 387 MobiDBLite consensus disorder prediction 156 175 - -
Dere09g0277 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Dere09g0277 387 PANTHER TARGET OF ERK KINASE MPK-1 54 377 - -
Dere09g0277 387 SUPERFAMILY RING/U-box 322 379 - -
Dere09g0277 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 382 IPR013083 -
Dere09g0277 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Dere09g0277 387 Pfam Ring finger domain 331 373 IPR001841 -
Dere09g0277 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0277 Dere-ChrDere09 5526274 5529141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0277 1 382 C3H Transcription Factor Family AT1G68070 45.974 5.16e-114 334