Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0273 ATGGCACCATTACCGGTGGAGCAGTCTGGTGAATCAGCACCAACTGACTCGCAGAGATCTATTCCGACCCCATTTCTGACGAAAACCTACCAGCTTGTGGATGATCTCTCTGTGGATGACCTAATTTCCTGGAACGAAGATGGAACAAGTTTTATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTGCTTCCTAAGTATTTCAAACACAACAACTTCTCCAGTTTCGTCCGTCAACTTAACACCTATGGGTTTCGGAAGGTTGTCCCGGATCGCTGGGAATTTTCTAACGACGGTTTCCGGAGGGGCGAGAGAAGCCTGCTACGAGACATACAACGGCGGAAAATATCGCCGTCTACGACCGCCGTAGCTGCGGCCAATACAGTGACGGTGGAGGCCGTACCTGCCGTTGCCAGAGCGGTGTCACCGACCAACTCCGGTGAAGAACAGGTAATCTCTTCAAACTCATCTCCAATTGCTCCACATAATACGGTGCAGCGCACCATAAGTTGCACCACTGCGCCTGAGCTCTTCGAGGAAAATGAGAAGCTTAGGAAAGAGAACATGCAATTGAGTAGCGAATTAAGTCAATTGAAAGGGCTATGTAGTAATATACTGACATTGATGACGAATTATGCTTCAAGCCAATTAGAGTCTACTAGTGTACCTGAAGGAAAACAGTTGGAGCTTTTACCTGGGATGCAAGTTTCGGCTGAAGAAGCCGTCGTAGGAGGCGGCGCTTCGTGTGAGACGAAAACAGCAGAAGCGGAGGTGCCCAAGTTGTTTGGGGTTTCTATTGGAACTAAACGACATCGGAGTTCAGAGAGAGAGGAATCAGAGAAAGAAGAACAAAATCAAACACAGTCCTCCCAGGAGCCCGACGGTGTCTCCGATGTCAAAGCAGAGCCGCTAGATGGCAGCAACTCCGATGATCAGGAGACACCCTGGTTGGAGCTTGGAAAATAG 966 0.4917 MAPLPVEQSGESAPTDSQRSIPTPFLTKTYQLVDDLSVDDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDGFRRGERSLLRDIQRRKISPSTTAVAAANTVTVEAVPAVARAVSPTNSGEEQVISSNSSPIAPHNTVQRTISCTTAPELFEENEKLRKENMQLSSELSQLKGLCSNILTLMTNYASSQLESTSVPEGKQLELLPGMQVSAEEAVVGGGASCETKTAEAEVPKLFGVSIGTKRHRSSEREESEKEEQNQTQSSQEPDGVSDVKAEPLDGSNSDDQETPWLELGK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0273 321 Gene3D - 17 115 IPR036388 -
Dere09g0273 321 MobiDBLite consensus disorder prediction 269 287 - -
Dere09g0273 321 FunFam Heat stress transcription factor B-4 17 115 - -
Dere09g0273 321 MobiDBLite consensus disorder prediction 1 22 - -
Dere09g0273 321 Coils Coil 174 201 - -
Dere09g0273 321 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g0273 321 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g0273 321 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g0273 321 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g0273 321 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g0273 321 MobiDBLite consensus disorder prediction 265 321 - -
Dere09g0273 321 MobiDBLite consensus disorder prediction 142 162 - -
Dere09g0273 321 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 289 IPR027725 -
Dere09g0273 321 MobiDBLite consensus disorder prediction 143 162 - -
Dere09g0273 321 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g0273 321 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0273 Dere-ChrDere09 5492965 5494043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0273 16 321 HSF AT4G11660 57.100 2.72e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere09g0273 HSF_DNA-bind 6.6e-32 CL0123