Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0267 ATGTCATCGTCAATCGTATCAGAACGCCCCAGGGCATTATCGAAGATTCTCTGCAACTTCATCTTGGCCCGAAACATGGGTGGGGGTCCTCGGACTTTCCCTGGCGGTGTCAACAAGTGGAAATGGAAGCGCATGCATGAGAAGCGAGCCAGAGATAAAGAGAAAAGGCTTCTGGAGCAAGAAAAGCAGCTCTACCAGGCTCGCATTCGCTCTCATATCCGAGCCAAACTTGCGGGAAAACCTGACGTCTCAAGCGCCACTCACAGCCCTATGGGGCCGGAGGACCACATTAAGGCCTTAGCCAATCGATTTATGAAGGAAGGGGCTGAAGATTTCTGGAACAGAAATGACGGTCCCTTAAAGTCTCCGCCCCCGCTTCTCAAAGATTTTCCAGGATCGAACAGACGGCCAGGATCAATTGGATCGCCAATGGATCTGAGAAAACTGGTATCGGAAGGCCGTCACATGTTTTCTAATCGCCAAAACGAAATTTTGACGAATACGAATAGTAATTATACTCAGACTAGGGATTACTCAATGCAAAGTCGAAGGAGGTTTCAGAGGAATGAGAGCTCTTCGGACGAGGAAGATTCCAATTTCGGTTTGGAGGGAAATCCTGCAAGACCCATCATCAAAAATTCAGTAAGTAATCAGAGAAACATGGTTAAGGCAAATGCGGGTGATTATATAAACAACAAGAAAAGTATCCCGAAAAGGCAGCGAAAGTTTTGGAGAGATGACAGTTCTTCCAGCGAGAGTGAGTCCGGCATGGATTCAGAGAGTTTAAGAGTTGACTGGGACGTAAATAAGATGGGTAGTAGTGCTTCTCTGGGGAAGTATGACGTAAAGACGAAGAGGAGGGTGCTGCCAAATTTTTATGATGAGGAGCGTGACCTTTCGGAGCAGGTTGAATTGATCAGGTATGAACTAAATAAGAGGAAGATGGCGGAGAATGAGCAGCAGAAAGGTGAAGAAGATACGCTACTTAGTCAGAAAAGATTTGATGAGTGTGGCATATCACCATTGACAATCAAGGCACTCTCTTTGGCTGGCTATATTCGCATGACCCGAGTTCAAGAGGCTAGCCTTGCTGTTTGCCTTGAGGGTAGAGATGCTTTGGTCAAAGCTAAAACTGGCACTGGGAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTTAAATCAATGGGTATGAAGTCCCGTCAACATGTGCCTCCTGTACTTGTTCTTATTCTCTGCCCAATCAGAGAACTGGCTAGTCAAATTGGTGCTGAATTAAAAGTTCTACTGAAGTACCATGTTGGAATTAGCGTTCAGACTCTAGTAGGAGGTATTCGATTTAAAGATGACCAAAAACGTCTTGAATCAGATCCATCCCAGATAATTGTTGCTACTCCAGGTAGGTTGCTGGATCATATTGAGTATAAGTCTGGGATATCTCTGCGGTTGATGGGATTGCAGATGCTTGTACTTGATGAAGCTGATCATTTGTTGGACCTGGGATTTCGAAAGAGCATAGAAAAGCTTGTTGATTGTTTGCCCCGTCAAAGGCAGTCCTTGCTATTTTCTGCAACCATTCCAAAAGAGGTCCGCCGTATATCTCAACTTGTTTTGAAAAGAGATCACACATATATTGATACAGTGGGGATAAGTAGCGTGGAAACTCCTGTTAAAGTAAAGCAATCTTATCTAATTGCTCCTCATGAATCGCATTTTCAAATAGTGCACCATATTTTGAAGGAGCATATCTCACAAGAACCTGATTATAAGGTTATTGTTTTCTGTGTGACCGCAATGGTGACTTCACTCTTGTATCAACTTCTCCGAGAAATGAAAATGAATGTTAGGGAGATACATTCCCGAAAACCTCAACTTTATCGAAGTCGCATATCAGATGAGTTTAGAGAATCTAAACAACTGATTCTTGTCTCCTCTGATGTTTCGTCTCGGGGAATGAATTATCCTGATGTTAGTTTAGTCATTCAGGTGGGCATTCCTTCTGACCGAGAACAATATATACATCGTGTGGGAAGAACAGGACGAGAAGGCAAAGATGGGGAAGGCGTATTGTTGATTGCTCCATGGGAAGAGTACTTTTTAGATGAAATCAAGGATCTCCCTCTCGAAAGATTCCCTTTACCAGATATAGATCCCCAGACAAAGCTTAAGATAGAAAATTCAATGGCAAAGATTGATAACGACGTTAAAGAATCAGCTTATCATGCTTGGCTTGGTTATTATAATTCGATAAGGGAAATTGGGAGAGATAAAACCACTCTAGCTGAGCTGGCGAGCCAATTTTCTGAATCAATTGGTTTGCAGAGGCCTCCCGCTCTCTTCAGAAAGACTGCACTTAAAATGGGATTGAAAGATATTCCTGGCATAAGAATACGTAGATAG 2406 0.4323 MSSSIVSERPRALSKILCNFILARNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEQEKQLYQARIRSHIRAKLAGKPDVSSATHSPMGPEDHIKALANRFMKEGAEDFWNRNDGPLKSPPPLLKDFPGSNRRPGSIGSPMDLRKLVSEGRHMFSNRQNEILTNTNSNYTQTRDYSMQSRRRFQRNESSSDEEDSNFGLEGNPARPIIKNSVSNQRNMVKANAGDYINNKKSIPKRQRKFWRDDSSSSESESGMDSESLRVDWDVNKMGSSASLGKYDVKTKRRVLPNFYDEERDLSEQVELIRYELNKRKMAENEQQKGEEDTLLSQKRFDECGISPLTIKALSLAGYIRMTRVQEASLAVCLEGRDALVKAKTGTGKSAAFLLPAIETVLKSMGMKSRQHVPPVLVLILCPIRELASQIGAELKVLLKYHVGISVQTLVGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISLRLMGLQMLVLDEADHLLDLGFRKSIEKLVDCLPRQRQSLLFSATIPKEVRRISQLVLKRDHTYIDTVGISSVETPVKVKQSYLIAPHESHFQIVHHILKEHISQEPDYKVIVFCVTAMVTSLLYQLLREMKMNVREIHSRKPQLYRSRISDEFRESKQLILVSSDVSSRGMNYPDVSLVIQVGIPSDREQYIHRVGRTGREGKDGEGVLLIAPWEEYFLDEIKDLPLERFPLPDIDPQTKLKIENSMAKIDNDVKESAYHAWLGYYNSIREIGRDKTTLAELASQFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0267 801 Pfam Helicase conserved C-terminal domain 579 684 IPR001650 -
Dere09g0267 801 MobiDBLite consensus disorder prediction 115 144 - -
Dere09g0267 801 MobiDBLite consensus disorder prediction 240 260 - -
Dere09g0267 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 332 360 IPR014014 GO:0003724
Dere09g0267 801 MobiDBLite consensus disorder prediction 158 180 - -
Dere09g0267 801 CDD SF2_C_DEAD 561 694 - -
Dere09g0267 801 MobiDBLite consensus disorder prediction 158 217 - -
Dere09g0267 801 MobiDBLite consensus disorder prediction 181 195 - -
Dere09g0267 801 Gene3D - 556 780 IPR027417 -
Dere09g0267 801 Gene3D - 309 548 IPR027417 -
Dere09g0267 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 730 IPR001650 -
Dere09g0267 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 546 IPR014001 -
Dere09g0267 801 SMART ultradead3 351 562 IPR014001 -
Dere09g0267 801 Pfam DEAD/DEAH box helicase 356 534 IPR011545 GO:0003676|GO:0005524
Dere09g0267 801 Coils Coil 43 63 - -
Dere09g0267 801 MobiDBLite consensus disorder prediction 239 260 - -
Dere09g0267 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 702 IPR027417 -
Dere09g0267 801 PANTHER RNA HELICASE 296 730 - -
Dere09g0267 801 SMART helicmild6 604 685 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0267 Dere-ChrDere09 5438096 5442938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0267 334 710 Eukaryotic Initiation Factors Gene Family AT3G19760 27.735 2.74e-44 163