Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0266 ATGGCGTTCAGTGGGACCCTACAGAAATGCAAGGCTTGCGATAAAACTGTTCATTTCATCGACACCTTAGCGGCCGACGGTGTCATTTATCACAAGACGTGCTTCAAATGCAGTCACTGCAATGGCCTTCTTGTTATAAGCAACTACTCCTCCATGGATGGAGTCTTGTACTCTGGTAGGCCACAGAATGAATCGGCTAAGGCGCCAAGCAAACTGTTCGCCATGTTCTTTGGGACTCAAGGCAAATGTTCATCCTGCATGAAAACTGTATACCCACTAGAAAAGTTTACTGTGGAAGGTGAGTTCTATCACAAAACATGCTTTAGGTGTTCTCGTGGAGGATTTTTTCTGACCATGTCGACCTATGCTGCTCTGGATGGACAATTTTACTGCAAGCACCATTTTGCTCAGGTGTTCAAGGAGAAAGGTAGCTATAATCATGTGATCAAAACAGCTGCGATAAAGAAGAATGGAGTGGAAGAGACAGCAGTAGAACCAGAAGCAGAGACAACAAAGGAAGAAGAAGATGTTGTCGTCCCACAAGAGCTATAG 552 0.4475 MAFSGTLQKCKACDKTVHFIDTLAADGVIYHKTCFKCSHCNGLLVISNYSSMDGVLYSGRPQNESAKAPSKLFAMFFGTQGKCSSCMKTVYPLEKFTVEGEFYHKTCFRCSRGGFFLTMSTYAALDGQFYCKHHFAQVFKEKGSYNHVIKTAAIKKNGVEETAVEPEAETTKEEEDVVVPQEL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0266 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Dere09g0266 183 Gene3D Cysteine Rich Protein 78 147 - -
Dere09g0266 183 MobiDBLite consensus disorder prediction 160 183 - -
Dere09g0266 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 148 - -
Dere09g0266 183 FunFam LIM domain and actin-binding 1 77 147 - -
Dere09g0266 183 Gene3D Cysteine Rich Protein 2 71 - -
Dere09g0266 183 PANTHER OS06G0237300 PROTEIN 6 57 - -
Dere09g0266 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 75 108 - -
Dere09g0266 183 ProSiteProfiles LIM domain profile. 8 69 IPR001781 -
Dere09g0266 183 ProSiteProfiles LIM domain profile. 81 141 IPR001781 -
Dere09g0266 183 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dere09g0266 183 Pfam LIM domain 10 57 IPR001781 -
Dere09g0266 183 Pfam LIM domain 83 137 IPR001781 -
Dere09g0266 183 SMART lim_4 9 61 IPR001781 -
Dere09g0266 183 SMART lim_4 82 134 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0266 Dere-ChrDere09 5428890 5429897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dere09g0266 LIM 1.2e-10 CL0167