Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0263 ATGAGAATAGCAGGAGCATATTCAGGGTCGTTATGTGGCGGAATATCTGGAAAATCGGGGCCTCATTCTCTGCCCTTGGCAAGGATCAAGAAGATAATGAAGAAGTCCGGCAACGATGTCAAAATGATATCAGGAGCCGCTCCAATTGTATTTGCGAAAGCTTGTGAACTGTTCATCGAGGAACTAACAAAAAGGTCTTGGTCTCTTACCATCCAAGGTAAACGGAGAACTCTCCACAGACAGGATGTCACCTCCGCCGTCATAGCCACCGATCTTTTCGATTTCTTGATCGATTTGGTTTTAAATTCTGTCAGCCCTGTAAACGCCACCGCTTCCACCGCCACCGTTATGGAAATGGAAACGCCGTGA 369 0.4688 MRIAGAYSGSLCGGISGKSGPHSLPLARIKKIMKKSGNDVKMISGAAPIVFAKACELFIEELTKRSWSLTIQGKRRTLHRQDVTSAVIATDLFDFLIDLVLNSVSPVNATASTATVMEMETP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0263 122 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 20 104 - -
Dere09g0263 122 Gene3D Histone, subunit A 14 101 IPR009072 GO:0046982
Dere09g0263 122 FunFam Nuclear transcription factor Y subunit C 14 102 - -
Dere09g0263 122 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Dere09g0263 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0263 Dere-ChrDere09 5420014 5420382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0263 22 100 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.557 2.39e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere09g0263 CBFD_NFYB_HMF 1.5e-18 CL0012