Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0257 ATGGCGTACAAGCTCTTACCGTTAACCTGCATCCGCAATGAAGGATGGGGTCAGCTATCGCCGCGACCTCACTACCCGTCGATGCCGAGCTTCCCAAAGGGCGTGACGGTGGAAGAAGGGAGCAGCGTGGAGGGGTCAGAGGTGAAGGCCCTGTTCTCCGTCGTTGGAATGACATGCTCTGCCTGCGCTGGCTCCGTCGAGAAGGCGATCAAGCGCCTACCTGGAATTCGTGAGGCTCTCGTGGATGTTCTCAATAATCGAGCTTTGGTTATCTTCTACCCTAACTTCGTTAACGAGGAGACTATTCGCGAGGCCATTGAGGATGCTGGGTTTGAAGCTACATTGCTCAGAGATGAGATGAATGAGAGATCCGTTCAAGTATGCCGCATAACCATAACTGGTATGACTTGCACTTCTTGCTCCTCCACTGTTGAATCAGCTGTGCAAGCAATTCCAGGTGTGCTGAAAGCTCAAGTGGCTTTGGCAACTGAAGAAGCAGAAGTGCACTACAACCCAAATATTGTCAGCTACAATCAGATTCTGGAAGCCATAAAAGACACTGGATTTGAAGCCACACTTATCAGTTCAGGTGAAGACATGAGCAAAGTTGACCTCCAAATCGAGGGTGTACGAACTGATCGTTCCATGAGAATCGTTGAAAACTCTCTTCAAGCTCTCCCAGGGGTCCAAGGTATAGAATTATATCCTGAGCTGAACAAAATATCGCTTTCTTTTAAACCAGACATGACAGGACCCAGGAATTTCATCAACGTGATTGCGGGAACTGGGTCTGGGCGTTTCAAGGCTAAAATATTTCCTCAAGGAGGACGAAGAGATTCTCATAGACGTGAGGAAATTAAACAGTATTATAGATCCTTCTTATGGAGTTTGGTTTTTACTGTTCCAGTCTTTCTACTCTCTATGGTGCTTATGTATATCCCCGGAACTAAGCATGGACTAGAAACCAAAGTTGTCAATATGCTTACAGTGGGACAGATATTAAGATGGGTGCTTTCCACACCAGTGCAGTTCATTATTGGCCGGCGATTCTACTCTGGTTCTTACAAAGCATTACGCCGTGGCTCCGCTAACATGGATGTTTTGATTGCCTTGGGAACTAATGCAGCATACTTCTACTCAGTGTACTCTGTACTGAGAGCTGCCACATCTCCACATTTCGAGGGTACAGATTTCTTTGAGACTAGCGCAATGCTTATTTCATTTATTCTGCTCGGAAAGTATCTGGAAGTTTTCGCCAAGGGGAAGACATCCAATGCAATTGCCAAGCTCATGAACTTGACCCCAGACACAGCTACATTGTTAACCCTGGACAATGAAGGGAACGTCATTAATGAAGAAGAAATTGACAGCCGATTAATTCAAAAGAATGATGTGATTAAAATTATTCCCGGAGCAAAAGTACCTTCCGATGGATTTGTTATCTGGGGCCAGAGCCACGTGAATGAGAGCATGATAACAGGAGAAGCACGTCCTGTGGCCAAGAGGAAGGATGACACTGTTATTGGTGGAACTTTGAATGAGAACGGCGTGTTGCATGTCAAGGCAACAAGAGTTGGATCAGAGAGTGCTCTTTCACAGATTGTTCGACTTGTTGAGTCAGCACAGATGGCCAAAGCTCCTGTTCAGAAGTTTGCTGACCGCATTTCGAAATACTTTGTGCCTCTGGTCATTTTAATCTCGGTTACAACTTTTCTTGCCTGGTTTTTAGCCGGAAGGTTTCATGCTTACCCAAAGTCTTGGATACCATCTTCCATGGACAGTTTTGAGCTTGCTTTGCAGTTTGGGATCTCTGTCATGGTCATAGCTTGCCCTTGTGCTTTAGGTTTAGCCACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAAGGTGTACTGATCAAAGGGGGGCAAGCATTAGAAAGTACGCGTAAGGTGAACTGCATAGTCTTCGACAAGACTGGTACTCTCACCATTGGGAAGCCTGTGGTTGTAAACACTAAACTATTAACGAATATGGTACTCCAAGAATTCTATGAACTTGTAGCTGCAGCTGAGGTAAATAGTGAGCATCCATTGGCCAAGGCCATTGTTGAGTATGCCAAGAAATTTAAAGATGAAGAGAACCCTGCCTGGCCTGAAGCGCGAGATTTTATCTCCATTTCTGGCCATGGAGTGAAGGCCACTGTTCGGAATAAGGAAATAATTGTGGGTAACAAGAGCTTGCTGTCTGACCACAATATAGCAATTCCTGCGGATGCTGAAGATATGATGGCAGAAGCAGAGGGGAAGGCTCAAACTGGAATTTTAGTATCAATTAACGGGGAAGTGGCTGGAGTTGTAGCAGTATCTGATCCATTGAAAACGGGTGCACAAGAAGTCATTTCAATTCTCAAGTCCATGAACATTAAAAGCATCATGGTGACTGGTGACAACTGGGGAACTGCTAATTCTATAGCAAGAGAAGTAGGAATTGAAGAAGTTCATGCTGAGACTAAACCAGAGCAGAAAGCAGAGAAAGTGAAGGACTTGCAGGCTTCTAACTTCATAGTGGCAATGGTTGGAGATGGTATCAATGATTCACCAGCACTTGTAGCAGCAGATGTAGGAATGGCAATTGGTGCCGGCACAGACATTGCAATTGAGGCGGCCGACATTGTTCTGATGAAGAGCAACTTGGAGGATGTTATTACTGCCATTGACCTTTCCAGAAAAACATTTTCTCGTATCCGTCTCAATTACATTTGGGCTTTGGGTTATAATCTTCTTGGCATTCCAATCGCTGCTGGAGCTCTTTTCCCCTCTACAGGATTCCGATTACCTCCATGGATTGCTGGGGCTGCTATGGCAGCCTCTTCTGTCAGCGTTGTTTGCTGTTCTCTGTTGTTAAAATATTACAGTAGGCCCAAGAAGCTGGACAAGCTTGAGATACGGGGCATTAGGATCGAATGA 2958 0.4544 MAYKLLPLTCIRNEGWGQLSPRPHYPSMPSFPKGVTVEEGSSVEGSEVKALFSVVGMTCSACAGSVEKAIKRLPGIREALVDVLNNRALVIFYPNFVNEETIREAIEDAGFEATLLRDEMNERSVQVCRITITGMTCTSCSSTVESAVQAIPGVLKAQVALATEEAEVHYNPNIVSYNQILEAIKDTGFEATLISSGEDMSKVDLQIEGVRTDRSMRIVENSLQALPGVQGIELYPELNKISLSFKPDMTGPRNFINVIAGTGSGRFKAKIFPQGGRRDSHRREEIKQYYRSFLWSLVFTVPVFLLSMVLMYIPGTKHGLETKVVNMLTVGQILRWVLSTPVQFIIGRRFYSGSYKALRRGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGTDFFETSAMLISFILLGKYLEVFAKGKTSNAIAKLMNLTPDTATLLTLDNEGNVINEEEIDSRLIQKNDVIKIIPGAKVPSDGFVIWGQSHVNESMITGEARPVAKRKDDTVIGGTLNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISVTTFLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTRKVNCIVFDKTGTLTIGKPVVVNTKLLTNMVLQEFYELVAAAEVNSEHPLAKAIVEYAKKFKDEENPAWPEARDFISISGHGVKATVRNKEIIVGNKSLLSDHNIAIPADAEDMMAEAEGKAQTGILVSINGEVAGVVAVSDPLKTGAQEVISILKSMNIKSIMVTGDNWGTANSIAREVGIEEVHAETKPEQKAEKVKDLQASNFIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYSRPKKLDKLEIRGIRIE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0257 985 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Dere09g0257 985 Gene3D - 420 542 - -
Dere09g0257 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 397 920 IPR023298 -
Dere09g0257 985 ProSitePatterns Heavy-metal-associated domain. 54 83 IPR017969 GO:0046872
Dere09g0257 985 ProSiteProfiles Heavy-metal-associated domain profile. 201 267 IPR006121 GO:0046872
Dere09g0257 985 Pfam haloacid dehalogenase-like hydrolase 648 870 - -
Dere09g0257 985 Pfam E1-E2 ATPase 433 630 - -
Dere09g0257 985 Gene3D - 659 735 IPR023299 GO:0000166
Dere09g0257 985 Gene3D - 736 787 IPR023299 GO:0000166
Dere09g0257 985 FunFam Copper-transporting ATPase HMA5 125 196 - -
Dere09g0257 985 CDD HMA 52 114 IPR006121 GO:0046872
Dere09g0257 985 Pfam Heavy-metal-associated domain 52 112 IPR006121 GO:0046872
Dere09g0257 985 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Dere09g0257 985 SFLD Haloacid Dehalogenase 634 908 - -
Dere09g0257 985 Gene3D - 201 263 - -
Dere09g0257 985 SUPERFAMILY HMA, heavy metal-associated domain 124 197 IPR036163 GO:0046872
Dere09g0257 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 654 660 IPR018303 -
Dere09g0257 985 FunFam Copper-transporting ATPase 1, putative 420 542 - -
Dere09g0257 985 SUPERFAMILY Calcium ATPase, transduction domain A 452 538 IPR008250 -
Dere09g0257 985 CDD P-type_ATPase_Cu-like 291 966 - -
Dere09g0257 985 CDD HMA 130 192 IPR006121 GO:0046872
Dere09g0257 985 FunFam Copper-transporting ATPase HMA5 47 118 - -
Dere09g0257 985 NCBIfam copper ion binding protein 130 191 IPR006122 GO:0005507
Dere09g0257 985 NCBIfam copper ion binding protein 51 113 IPR006122 GO:0005507
Dere09g0257 985 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 983 - -
Dere09g0257 985 SUPERFAMILY HAD-like 651 962 IPR036412 -
Dere09g0257 985 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Dere09g0257 985 FunFam Probable copper-transporting ATPase HMA5 760 913 - -
Dere09g0257 985 SUPERFAMILY HMA, heavy metal-associated domain 196 264 IPR036163 GO:0046872
Dere09g0257 985 Gene3D - 49 120 - -
Dere09g0257 985 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Dere09g0257 985 PRINTS P-type cation-transporting ATPase superfamily signature 879 891 - -
Dere09g0257 985 PRINTS P-type cation-transporting ATPase superfamily signature 652 666 - -
Dere09g0257 985 PRINTS P-type cation-transporting ATPase superfamily signature 781 792 - -
Dere09g0257 985 PRINTS P-type cation-transporting ATPase superfamily signature 803 813 - -
Dere09g0257 985 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Dere09g0257 985 PRINTS Copper-transporting ATPase 1 signature 104 124 - -
Dere09g0257 985 PRINTS Copper-transporting ATPase 1 signature 75 98 - -
Dere09g0257 985 PRINTS Copper-transporting ATPase 1 signature 150 171 - -
Dere09g0257 985 PRINTS Copper-transporting ATPase 1 signature 49 74 - -
Dere09g0257 985 NCBIfam HAD-IC family P-type ATPase 405 939 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere09g0257 985 SUPERFAMILY HMA, heavy metal-associated domain 45 117 IPR036163 GO:0046872
Dere09g0257 985 NCBIfam heavy metal translocating P-type ATPase 365 965 IPR027256 GO:0006812|GO:0016020|GO:0019829
Dere09g0257 985 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Dere09g0257 985 Gene3D - 126 198 - -
Dere09g0257 985 SFLD p-type atpase 634 908 IPR044492 -
Dere09g0257 985 Gene3D - 619 913 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0257 Dere-ChrDere09 5345505 5350368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0257 1 985 Primary Pumps ATPases AT1G63440 76.032 0.0 1536