Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0241 ATGGCCTTCGCACGACGGCCCTACTCTCGTCCCATGGCTTATTCTCTCTCTTCCCTTGCCGCGAATTTTGGCTCAGAAAATTTTGCGGAAATGGTACCAGAGAACCTGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCAGTGGAGCTACGCAATCTACTGGTCTGGTTCAGAGATACAGCCCGGGGTGTTGGAGTGGGGTGAAGGGTATTACAATGGGGACATAAAGACGAGGAAAACAAGTCAAGCAGTTGAACTTAATTCTGACCTAATTGGTTTGCAGAGGAGCGAGCAGCTTAGAGATCTATACGAGTCCCTCGCAACCGCAGAATCCAGTCCACAAACTAAAAGGCCTTCAGCTGCACTATCCCCTGAAGATCTCACTGATACTGAGTGGTATTACTTGGTTTGCATGTCATTTGTATTCAACATTGGCCAAGGGTTGCCAGGAAGAACTCTAGCGAATGGCCAACCCATTTGGCTGCACAATGCCCATTTTGCTGATAGTAGAGTTTTTAGTCGCTCCCTGCTGGCAAAGACAGTGGTGTGCTTTCCTTTTCTGGAAGGTGTTCTTGAGCTAGGGACAACCGATGTGGTCCCAGAAGACCTCAGTCTCATTCAACGCATCAGAACTTCTTTCTTGGATATTTTAGACGCCAAAGTCTGCAAGAAGTCTGGAGCTGCATTAAATACAAGAGACGGTGAAGATGTTGCTTGTCCAGCATTTGACCACAATGCTTTTGATGTAAAATTAACTCCGGAGTTAGAATATGAAGTAGCAAATGCGACTTCTCCCAATAGTAGTTCAAATGCGTTACAAGCCAATCAACAACCAGATGAGAGATTCATGGTTGAAGGGATGAATGGTGTTGCTTCTCAAGTTCAAAGCTGGCAAGTGATGGAGGACGAGTTGAGTAACTGTGTCCATAATTCCATGAATACCAGTGACTGTATATCTCAAACTTTTGCTGGTCCTGAAAAGAATGCTTCTGTTCCCAAGGGTGATCATTGTGGGCAAGATCTTCAAGAGAACAAGAATACAAAAATGACTTCAGTGGATGTTCGTAATGATGATTGGCATTATCAGAGAGTACTTTCTTCTCTTCTTAAAAGTTCAGACCAATTAACTATGGGAGCACACTTTCAAAACTCTCGCTGCGAATCCAGCTTTGTCAGTTGGAAGAAAGAAGAATCATTAGGTTGTCAATGGCCAAGAGGAGGAACCCAACAAAAAATATTGAAGAAGGTATTGTTTGAAGTTCCTCGTATGCACATAGATTGGCTGCTTGAGTCTCTAGAAGAAAATGACTATAAAGAGGGAATGAGACCTGAAGCTGATGAAATTGGCATGAACCATGTACTGTCAGAAAGAAGGCGAAGGGCAAAACTAAATGAAAGGTTTTTAACACTTAGATCAATGGTCCCTTTGATTACTAAGGATGACAAAGTTTCAATACTAGATGAGGCAATAGAATACCTTAAAAAGCTGGAGAAAAAGGTGAGAGAGTTGGAAGCTAAACGGGAGTTCAAAGATGTAAAGACTAGAACTAAAAGAGCACCTCAAGATGTGGTGGAAAGGACTTGTGACAATTATTGTAACAACAAAGCTGATAATGGCAAGAAGCCAGTGACAAACAAGAGAAAGGTTTGTGACATCGATGAGACTGAGACAGAGACACAGAGAGAGGTTGATTCAGTTCATCTAAAAGATAATTCTAATAATATTACTATCTGTATGAACGACAATGAGGTTCTGATTGAAATGAAGTGTCCTTGGAGGGAAGGAGTTCTGCTAGAAATAATGGAAGCAGTCAGCAATCTTCATTTAGATTTTCATTCAGTTCATTCATCAGAAGCTGATGGGAATCTTTATGTAACCATGAAATCCAAGTTCAGAGGACCAGGTTTTCCCTCTACAAAAAAGATCAAACAAGCCCTCTTCAAGGCGGCTTGGAAGTGCTGA 1965 0.4214 MAFARRPYSRPMAYSLSSLAANFGSENFAEMVPENLKKQLALAVRSIQWSYAIYWSGSEIQPGVLEWGEGYYNGDIKTRKTSQAVELNSDLIGLQRSEQLRDLYESLATAESSPQTKRPSAALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLANGQPIWLHNAHFADSRVFSRSLLAKTVVCFPFLEGVLELGTTDVVPEDLSLIQRIRTSFLDILDAKVCKKSGAALNTRDGEDVACPAFDHNAFDVKLTPELEYEVANATSPNSSSNALQANQQPDERFMVEGMNGVASQVQSWQVMEDELSNCVHNSMNTSDCISQTFAGPEKNASVPKGDHCGQDLQENKNTKMTSVDVRNDDWHYQRVLSSLLKSSDQLTMGAHFQNSRCESSFVSWKKEESLGCQWPRGGTQQKILKKVLFEVPRMHIDWLLESLEENDYKEGMRPEADEIGMNHVLSERRRRAKLNERFLTLRSMVPLITKDDKVSILDEAIEYLKKLEKKVRELEAKREFKDVKTRTKRAPQDVVERTCDNYCNNKADNGKKPVTNKRKVCDIDETETETQREVDSVHLKDNSNNITICMNDNEVLIEMKCPWREGVLLEIMEAVSNLHLDFHSVHSSEADGNLYVTMKSKFRGPGFPSTKKIKQALFKAAWKC 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0241 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 448 497 IPR011598 GO:0046983
Dere09g0241 654 Gene3D - 446 527 IPR036638 GO:0046983
Dere09g0241 654 PANTHER TRANSCRIPTION FACTOR TT8 31 647 - -
Dere09g0241 654 Pfam Helix-loop-helix DNA-binding domain 452 498 IPR011598 GO:0046983
Dere09g0241 654 SMART finulus 454 503 IPR011598 GO:0046983
Dere09g0241 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 450 510 IPR036638 GO:0046983
Dere09g0241 654 Coils Coil 487 514 - -
Dere09g0241 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 36 214 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0241 Dere-ChrDere09 5171758 5175997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0241 32 654 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 48.494 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g0241 bHLH-MYC_N 1.3e-45 CL0161