Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0220 ATGGCACGTTGGTCAACTCTCACAAATGGATCTTCCATAGATTGCCTTGAAACTGTCGGTGCATATCAGGGTAATGGCTGTTGCCCTAACTTTGATCATGTAGTAAAAGATCACGTTGATGATGAAGTTAAACAAAAATGCTTGTTTTATCAGCTTCTTTCATTTCACCTAAAGGAGAAGAGTTCTTGCGGCATTATTCGTCCTGTACCAGTAATGCTTGGTGATGGTCAATCGCTGGATTTATACAATCTGTTCTCCTTTGTGGAGGAAAGAGGTGGGTATGCTCTGGTGTCGAAGAAAGGGTTGTGGGGTTCTGTGGCCAAGGAATTGGGTTTGAATCTTGAAGTTTTTGCTTCAGTGAAATTAGTTTATGACAAGTATTTGAATGAGTTTGAAAGATGGCTTAGCGAGACTGTTGGAGGAAAGAATTTCAGAAGTGGGAATCATGGGTTTAATTTATGTTTTAATTTAATGCCGCTAGAACTAGAAAGTGATTTTAAACATTTATTATGTCGGAACCCCAAGTTGAAAGATGATGCACCTATCCAGCAGGAATCAAGTAAAATCAGAGAGGACATTGACTTGGGTAACAACCAGAGTGAAATGAATTTATTGGACAACAAAAATCAGCTTACTACATGCGAGGAAGTTCACAGTATCCATGGTGATGATGACTTAAAACTTTGTAACAGTGTTGAGAATGATCTAGCTACCTTGAACTCAGAAGTTACTAAGACACAACTTAATTCTCGCAAGCGCAAACGGGAAGCATTATCTGCAATGCTGAACTGGATCAGACAAGTTGCAAAGCATCCTCTTGATCCTTCGGTTGAACCAATACCAGAAGCATCTAAGTGGAAGGAGTATAAAGGCAAAGATTTTTGGGTCCAGACACTTAGAGCAAGAGAGGCACTGTTGCAGAGGTCGTGCGTCAAACCAAACAGTGGACAGTCTTCCTTCCAGAAGCAAAAGATGCATCCTGCCATGTATGAGGATCATGCTGCTATCGGTCATCATTCTACAGTGAAACTGAGATGTAGTAAAAGGCTGTCTACCTCAGTTAAATCCCAATCATGCTCTTGTTGCAATTCATGTTCAGCCTTTGAAAATAAGTTGACAAGGTCAGTCACTATGGAGTCAGAAAATGCTCCTCTGGGGAAAGCAACTGCAGTGGATGATTTGTTGACTGCAACAATAACGGCTAACCCATCCATGGATGATACTCTCGAGAAGCAAGTTGCTGTAGGTCCTCATTTTCAAGCTGAAGTGCCAAAATGGACTGGTGTAATTTCTGAAAGCGATTCTAAATGGTTAGGCACACGAGTATGGCCTCTGAAGGATAGTGAGTCCAAATTTGATACTAATACAGATATTACTGGGACAGGAAGAGAAGAGAAGTGTAGCTGTGAAGTTCAAGGTTCTGTTGAATGTGTTAGATTTCACATTGCTGAGAAGCGGATGAAGTTGAAGCTTGAATTGGGTTCGGCATTTTACCGTTGGGGATTTGATGGTATGGGGGAGGAAGTTTCACTTCAATGGACGACTGAAGAAGAAAAGAAATTGAAGGATAGTATGATGTCAAATCTTCCCTCTCAAAGTAGGGGCAACCCATTCAAGCACTTGACAAATAAGACGAGGAGAAGATTGGTAAGCTATTACTTTAATGTATTTCTCATTCAACGTAGAATTTATCAGAATCGTGTGATTCCGAATTGTGTTGATAGCGATGATGATGAACTAGAATTTGGATCTTTAAGCGATGGTTTTGGAATGGAAGCTGTCAAGGGTCCACATTATAATTTTCTGGAGTGTTCCCATAACAACCAGTGCACGGAATTGGAGTAA 1845 0.4065 MARWSTLTNGSSIDCLETVGAYQGNGCCPNFDHVVKDHVDDEVKQKCLFYQLLSFHLKEKSSCGIIRPVPVMLGDGQSLDLYNLFSFVEERGGYALVSKKGLWGSVAKELGLNLEVFASVKLVYDKYLNEFERWLSETVGGKNFRSGNHGFNLCFNLMPLELESDFKHLLCRNPKLKDDAPIQQESSKIREDIDLGNNQSEMNLLDNKNQLTTCEEVHSIHGDDDLKLCNSVENDLATLNSEVTKTQLNSRKRKREALSAMLNWIRQVAKHPLDPSVEPIPEASKWKEYKGKDFWVQTLRAREALLQRSCVKPNSGQSSFQKQKMHPAMYEDHAAIGHHSTVKLRCSKRLSTSVKSQSCSCCNSCSAFENKLTRSVTMESENAPLGKATAVDDLLTATITANPSMDDTLEKQVAVGPHFQAEVPKWTGVISESDSKWLGTRVWPLKDSESKFDTNTDITGTGREEKCSCEVQGSVECVRFHIAEKRMKLKLELGSAFYRWGFDGMGEEVSLQWTTEEEKKLKDSMMSNLPSQSRGNPFKHLTNKTRRRLVSYYFNVFLIQRRIYQNRVIPNCVDSDDDELEFGSLSDGFGMEAVKGPHYNFLECSHNNQCTELE 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0220 614 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 39 606 - -
Dere09g0220 614 Pfam ARID/BRIGHT DNA binding domain 49 132 IPR001606 GO:0003677
Dere09g0220 614 Gene3D - 32 142 IPR036431 GO:0003677
Dere09g0220 614 SMART bright_3 44 137 IPR001606 GO:0003677
Dere09g0220 614 ProSiteProfiles ARID domain profile. 42 136 IPR001606 GO:0003677
Dere09g0220 614 SUPERFAMILY ARID-like 41 137 IPR036431 GO:0003677
Dere09g0220 614 CDD ARID 49 132 - -
Dere09g0220 614 SMART ARID_2 40 132 - -
Dere09g0220 614 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0220 Dere-ChrDere09 4998007 5010701 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere09g0220 ARID 8.7e-12 CL0123