Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0219 ATGGGCGGTTGCTGTTGTTGTTCTTCCAAAGAAACTGAATTGAGCGCTCCACCAGCATATTACTATTACCCAAGAGCATCGGAAGAGCATGTTCCCCTATCATCTCATCATGGTTCTGCCTCTGCTTTCTCTGGAGGGCTCCTAGTTGATACTAATCTTGAAACTTCAAGTCCTGATACTTATAGACCGCCTCCTGCTCCTGTCCCTTACAGTGTCACTTTAGTTGTCACTCAAACTCCACCCGGGGCTCATGAAATTAGTGATGATAAGGCTAATGCATCCCTGCAATCTACAAATCCTACGTCAGTTCAAGAAACAGTTAGTAGTGACAATCATGGAACCTTGGCTAAGTTGGAAGAGCTGAAGGAATCTGAGTGCAAAGTTCAGAGTGACTTAGAACTGGACTCAGCAAAGGATTCTGAAATTGAGCTTCAAAAGTTGGCAGAACCTATATTTTTAGCAGAAGAAGAGGATGTATGTCCGATCTGTTTAGAAGAGTACGATGCTGAGAATCCAAAACTCAACACAAAATGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAAATTGTCCTGTCTGTGATATGGATATGGTTTTCGACCCTCCAATTGATTAA 636 0.4245 MGGCCCCSSKETELSAPPAYYYYPRASEEHVPLSSHHGSASAFSGGLLVDTNLETSSPDTYRPPPAPVPYSVTLVVTQTPPGAHEISDDKANASLQSTNPTSVQETVSSDNHGTLAKLEELKESECKVQSDLELDSAKDSEIELQKLAEPIFLAEEEDVCPICLEEYDAENPKLNTKCDHHFHLACILEWMERSENCPVCDMDMVFDPPID 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0219 211 SMART ring_2 160 200 IPR001841 -
Dere09g0219 211 SUPERFAMILY RING/U-box 153 207 - -
Dere09g0219 211 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 207 - -
Dere09g0219 211 FunFam Putative E3 ubiquitin-protein ligase RHB1A 137 205 - -
Dere09g0219 211 CDD RING-H2_AIRP1-like 156 204 - -
Dere09g0219 211 Pfam Ring finger domain 159 200 IPR001841 -
Dere09g0219 211 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Dere09g0219 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0219 Dere-ChrDere09 4967080 4969215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0219 1 211 C3H Transcription Factor Family AT5G41350 53.704 4.31e-71 213